Mercurial > repos > iuc > extract_genomic_dna

comparison test-data/extract_genomic_dna_out1.fasta @ 2:702970e4a134 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit 9192c1e90e2fd5017e6044884bcc6f2e80ba8b31
author iuc
date Wed, 09 Mar 2016 05:07:21 -0500
parents 8dd8e89c0603
children
comparison
equal deleted inserted replaced
1:9af3f57e50b9 2:702970e4a134
1 >hg17_chr1_147962192_147962580_- 1 >mm9~test_chromosome~53~550~+
2 ACTTGATCCTGCTCCCTCGGTGTCTGCATTGACTCCTCATGCTGGGACTG 2 TACTATCTGACTAGACTGGAGGCGCTTGCGACTGAGCTAGGACGTGCCAC
3 GACCCGTCAACCCCCCTGCTCGCTGCTCACGTACCTTCATCACTTTTAGT 3 TACGGGGATGACGACTAGGACTACGGACGGACTTAGAGCGTCAGATGCAG
4 GATGATGCAACTTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAAGT 4 CGACTGGACTATTTAGGACGATCGGACTGAGGAGGGCAGTAGGACGCTAC
5 CCCTGTTCGTGAGGTCTGTCCAGTGACCCATCGTCCAGCCCTATACCGGG 5 GTATTTGGCGCGCGGCGCTACGGCTGAGCGTCGAGCTTGCGATACGCCGT
6 ACCCTGTTACAGACATACCCTATGCCACTGCTCGAGCCTTCAAGATCATT 6 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7 CGTGAGGCTTACAAGAAGTACATTACTGCCCATGGACTGCCGCCCACTGC 7 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAC
8 CTCAGCCCTGGGCCCCGGCCCGCCACCTCCTGAGCCCCTCCCTGGCTCTG 8 TATTACTTTATTATCTTACTCGGACGTAGACGGATCGGCAACGGGACTGT
9 GGCCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGA 9 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10 >hg17_chr1_147984545_147984630_+ 10 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTT
11 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTT 11 TTCTACTTGAGACTGGGATCGAGGCGGACTTTTTAGGACGGGACTTGC
12 TGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG 12 >mm9~test_chromosome~53~250~+
13 >hg17_chr1_148078400_148078582_- 13 TACTATCTGACTAGACTGGAGGCGCTTGCGACTGAGCTAGGACGTGCCAC
14 GTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAA 14 TACGGGGATGACGACTAGGACTACGGACGGACTTAGAGCGTCAGATGCAG
15 GAGAGGTTCCACATGAGCATGACTGAGGAGCAGCTGCAGCTGCTGGTGGA 15 CGACTGGACTATTTAGGACGATCGGACTGAGGAGGGCAGTAGGACGCTAC
16 GCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACG 16 GTATTTGGCGCGCGGCGCTACGGCTGAGCGTCGAGCTTGCGATACGCC
17 GCTTCCAGTACCTCACCAACGGCATCATGTGA 17 >mm9~test_chromosome~351~400~+
18 >hg17_chr1_148185136_148185276_+ 18 ACTATTACTTTATTATCTTACTCGGACGTAGACGGATCGGCAACGGGACT
19 ATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGC 19 >mm9~test_chromosome~501~550~+
20 CCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATC 20 TTTTCTACTTGAGACTGGGATCGAGGCGGACTTTTTAGGACGGGACTTGC
21 CGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
22 >hg17_chr10_55251623_55253124_-
23 TCTTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCT
24 CAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACT
25 ATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAGAGCAACAA
26 ACTGAAGTCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAA
27 GTGCCCATAATCCCCTTTATAAGGAAAACATAAGTCAAGTATCAACAAAT
28 TCAGACATTTCACAGAGAACAGATTTTGTAGACCCATTTTCACCCAAAAT
29 ACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGC
30 TGTGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGTTCCA
31 AATAGACCAGAGATCATAGATCTGCAGCAGTGGCAAGGCACCAGGCAGAA
32 AGCTGAAAATGAAAACACTGGAATCTGTACAAACAAAAGAGGTAGCAGCA
33 ATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATA
34 AGGCAAGGTGAAACACTGATGATAGAAGGAACAGAACAGTTGAAATCTCT
35 CTCTTCAGACTCTTCATTTTGCTTTCCCAGGCCTCACTTCTCATTCTCCA
36 CTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTC
37 ATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTTCAAGGCCTTG
38 TGTTTTACATTCTTCACTCTCTAGGAGAGAGACACCTATTTGTATGTTAC
39 CTATTGAAACCGAAAGAAATATTTTTGAAAATTTTGCCCATCCACCAAAC
40 ATCTCTCCTTCTGCCTGtccccttccccctcctcctcctatttctcctcc
41 ttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctc
42 ctttttctcttttttgtcctcctccctctcctccttctatccctcttcct
43 cttcctcctcctACATTTTTTCCACTTTCCGTTTCAACGTCTGGTCCCCC
44 AACAccacctcttctacctccatttccaactcctcttcctccaccacctc
45 cttctattccttgccctccacctccttcAGCTTCATTTCTGTCCACAGAG
46 TGTGTCTGTATAACAGGTGTTAAATGCACGACCAACTTGATGCCTGCCGA
47 GAAAATTAAGTCCTCTATGACACAGCTATCAACAACGACAGTGTGTAAAA
48 CAGACCCTCAGAGAGAACCAAAAGGCATCCTCAGACACGTTAAAAACTTA
49 GCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGAAAAAAA
50 CTATCTACGCACAAATGTTTCAGAACTTCAAACTATGTGCCCTTCAGAAG
51 TAACAAATATGGAAATCACATCTGAACAAAACAAGGGGAGTTTGAACAAT
52 ATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTA
53 A
54 >hg17_chr11_116124407_116124501_-
55 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGG
56 CAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATATGTAA
57 >hg17_chr11_116206508_116206563_+
58 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTC
59 TGCCC
60 >hg17_chr11_116211733_116212337_-
61 CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGC
62 TGCGCGAACAGCTCGGCCCTGTGACCCAGGAGTTCTGGGATAACCTGGAA
63 AAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGT
64 GAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGG
65 AGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTC
66 CAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAGAAGCTGAGCCC
67 ACTGGGCGAGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGC
68 GCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCG
69 CGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCA
70 CGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCG
71 CGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAG
72 GTCAGCTTCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAACACCCA
73 GTGA
74 >hg17_chr11_1812377_1812407_+
75 ATGCTCCACCTGCATGGCTGGCAAACCATG
76 >hg17_chr12_38440094_38440321_-
77 GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCATC
78 TATGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGGAAATTGAATC
79 ACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAG
80 GGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCT
81 GACAATGATGCTTCTGATGTGGAATAA
82 >hg17_chr13_112381694_112381953_+
83 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTA
84 CCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGA
85 AGATGGACCCGGCAGGTCTGGAGGGAGGCCCCCGTGATGAATCCCGTGAT
86 GAGCCGCCGATCCGAGCTCAGGCTGCGTCATGGGACCAGCCACAAGGTTG
87 CCTGACCTATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTAC
88 AGCTGCCAG