Mercurial > repos > iuc > extract_metaphlan_database
diff generate_test_data.sh @ 0:5b2f8b6a3609 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author | iuc |
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date | Mon, 19 Apr 2021 20:55:20 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/generate_test_data.sh Mon Apr 19 20:55:20 2021 +0000 @@ -0,0 +1,49 @@ +#/usr/bin/env bash + +metaphlan_hclust_heatmap.py \ + --in test-data/merged_community_profile.tabular \ + --out test-data/heatmap.png \ + -m 'average' \ + -d 'braycurtis' \ + -f 'correlation' \ + --minv '0' \ + --tax_lev 'a' \ + --sdend_h '0.1' \ + --fdend_w '0.1' \ + --cm_h '0.03' \ + --font_size '7' \ + --clust_line_w '1' \ + --perc '90' \ + -c 'jet' + +metaphlan_hclust_heatmap.py \ + --in test-data/merged_community_profile.tabular \ + --out test-data/heatmap.pdf \ + -m 'ward' \ + -d 'euclidean' \ + -f 'euclidean' \ + --minv '0' \ + --tax_lev 'a' \ + --sdend_h '0.1' \ + --fdend_w '0.1' \ + --cm_h '0.03' \ + --font_size '7' \ + --clust_line_w '1' \ + --perc '90' \ + -c 'pink' + +metaphlan_hclust_heatmap.py \ + --in test-data/merged_community_profile.tabular \ + --out test-data/heatmap.svg \ + -m 'complete' \ + -d 'hamming' \ + -f 'matching' \ + --minv '0' \ + --tax_lev 'a' \ + --sdend_h '0.1' \ + --fdend_w '0.1' \ + --cm_h '0.03' \ + --font_size '7' \ + --clust_line_w '1' \ + --perc '90' \ + -c 'pink' \ No newline at end of file