Mercurial > repos > iuc > extract_metaphlan_database
changeset 4:97ad0d817a45 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 2cec4cbdc43f84720af3e22eb008e9788481ce00"
| author | iuc |
|---|---|
| date | Wed, 02 Feb 2022 22:02:12 +0000 |
| parents | c11805a111ea |
| children | b4c750fe0fe3 |
| files | macros.xml test-data/SRS014464-Anterior_nares-abundances.tabular |
| diffstat | 2 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/macros.xml Fri Sep 24 07:22:56 2021 +0000 +++ b/macros.xml Wed Feb 02 22:02:12 2022 +0000 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">3.0.13</token> + <token name="@TOOL_VERSION@">3.0.14</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">20.01</token> <xml name="edam_ontology">
--- a/test-data/SRS014464-Anterior_nares-abundances.tabular Fri Sep 24 07:22:56 2021 +0000 +++ b/test-data/SRS014464-Anterior_nares-abundances.tabular Wed Feb 02 22:02:12 2022 +0000 @@ -1,4 +1,5 @@ #custom_db +#mpa_v21_CHOCOPhlAnxxx_2 #/home/bebatut/miniconda3/envs/mulled-v1-b4915a464cf72db4053ec566c65e3f5f431691323f08f9b6b1c9ecfc4f8b9c88/bin/metaphlan in --input_type fasta --read_min_len 70 --bowtie2db ref_db/ --index custom_db --bt2_ps very-sensitive --min_mapq_val 5 -t rel_ab --tax_lev a --min_cu_len 2000 --add_viruses --stat_q 0.2 --perc_nonzero 0.33 --avoid_disqm --sample_id_key SampleID --sample_id Metaphlan_Analysis -o /tmp/tmptu3575j7/files/000/dataset_19.dat --bowtie2out bowtie2out -s /tmp/tmptu3575j7/files/000/dataset_21.dat --biom /tmp/tmptu3575j7/files/000/dataset_22.dat --nproc 1 #SampleID Metaphlan_Analysis #clade_name NCBI_tax_id relative_abundance additional_species