Mercurial > repos > iuc > fargene
view test-data/contigs/hmmsearchresults/retrieved-genes-class_B_1_2-hmmsearched.out @ 2:b982a9ea939c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit d5aed24826ee23758798b458334b2f5e7c84eb0f
| author | iuc |
|---|---|
| date | Fri, 09 Feb 2024 21:30:09 +0000 |
| parents | 6f743c615c41 |
| children |
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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target # ------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- klebsiella_plasmid_FN396876.1_seq1_4 - 261 b1_b2_70_centroids-aligned - 248 3.1e-84 270.9 0.0 1 1 5.6e-85 3.4e-84 270.7 0.0 7 244 7 258 1 260 0.94 - # # Program: hmmsearch # Version: 3.2.1 (June 2018) # Pipeline mode: SEARCH # Query file: /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm # Target file: /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/tmpdir/retrieved-translated.fasta # Option settings: hmmsearch --domtblout /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/hmmsearchresults/retrieved-genes-class_B_1_2-hmmsearched.out -E 1000 --domE 1000 /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/tmpdir/retrieved-translated.fasta # Current dir: /home/ubuntu/data/fargene/tutorial/tutorialdata # Date: Wed Jul 17 13:17:48 2019 # [ok]