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comparison fasta-stats.xml @ 2:cd0874854f51 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit adc5e3616c1849551c9a712b651b0d1c6b0e88f1"
author iuc
date Mon, 26 Apr 2021 10:01:43 +0000
parents 16f1f3e2de42
children 56022eb50bbd
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1:16f1f3e2de42 2:cd0874854f51
12 > '$stats' 12 > '$stats'
13 ]]> 13 ]]>
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/> 16 <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/>
17 <param name="genome_size" type="float" optional="True" label="Genome size estimate (optional)" help="Estimate of the genome size in megabases (MB). If specified, NG50 will be calculated."/> 17 <param name="genome_size" type="float" optional="True" label="Genome size estimate (optional)" help="Estimate of the genome size in bases. If specified, NG50 and LG50 will be calculated."/>
18 </inputs> 18 </inputs>
19 <outputs> 19 <outputs>
20 <data name="stats" format="tabular" label="${tool.name} on ${on_string}: Fasta summary stats"/> 20 <data name="stats" format="tabular" label="${tool.name} on ${on_string}: Fasta summary stats"/>
21 </outputs> 21 </outputs>
22 <tests> 22 <tests>
23 <test> 23 <test>
24 <param name="dataset" value="test.fasta"/> 24 <param name="dataset" value="test.fasta"/>
25 <output name="stats" file="test_out.txt"/> 25 <output name="stats" file="test_out.txt"/>
26 </test> 26 </test>
27 <test> 27 <test>
28 <param name="dataset" value="test.fasta"/> 28 <param name="dataset" value="ng50_input.fasta"/>
29 <param name="genome_size" value="5.0"/> 29 <param name="genome_size" value="4000"/>
30 <output name="stats" file="ng50_out.txt"/> 30 <output name="stats" file="ng50_out.txt"/>
31 </test> 31 </test>
32 </tests> 32 </tests>
33 <help> 33 <help>
34 **Fasta Stats** 34 **Fasta Stats**