Mercurial > repos > iuc > fasta_stats

diff fasta-stats.xml @ 2:cd0874854f51 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ commit adc5e3616c1849551c9a712b651b0d1c6b0e88f1"
author iuc
date Mon, 26 Apr 2021 10:01:43 +0000
parents 16f1f3e2de42
children 56022eb50bbd
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line diff
--- a/fasta-stats.xml	Wed Apr 21 09:10:46 2021 +0000
+++ b/fasta-stats.xml	Mon Apr 26 10:01:43 2021 +0000
@@ -14,7 +14,7 @@
     </command>
     <inputs>
         <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/>
-        <param name="genome_size" type="float" optional="True" label="Genome size estimate (optional)" help="Estimate of the genome size in megabases (MB). If specified, NG50 will be calculated."/>
+        <param name="genome_size" type="float" optional="True" label="Genome size estimate (optional)" help="Estimate of the genome size in bases. If specified, NG50 and LG50 will be calculated."/>
     </inputs>
     <outputs>
         <data name="stats" format="tabular" label="${tool.name} on ${on_string}: Fasta summary stats"/>
@@ -25,8 +25,8 @@
             <output name="stats" file="test_out.txt"/>
         </test>
         <test>
-            <param name="dataset" value="test.fasta"/>
-            <param name="genome_size" value="5.0"/>
+            <param name="dataset" value="ng50_input.fasta"/>
+            <param name="genome_size" value="4000"/>
             <output name="stats" file="ng50_out.txt"/>
         </test>
     </tests>