Mercurial > repos > iuc > fastk_logex

annotate logex.xml @ 4:94217ea28453 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 24dc6373560bd5e409fca84154634f5a528001c3
author iuc
date Wed, 14 May 2025 07:36:48 +0000
parents 9b1aebbaec34
children 0cae005d8c4c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
94217ea28453 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 24dc6373560bd5e409fca84154634f5a528001c3
iuc
parents: 3
diff changeset
1 <tool id="fastk_logex" name="FastK Logex" version="@TOOL_VERSION@+galaxy4" profile="24.2" license="MIT">
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
2 <description>Performs binary operations on the generated Ktab files from FASTK suite</description>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
3 <macros>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
4 <import>macros.xml</import>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
5 </macros>
1
fb6b6d5e6bd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 2df03448c35339ea02f112abb0d0f07b5c41d93e
iuc
parents: 0
diff changeset
6 <expand macro="xrefs"/>
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
7 <expand macro="requirements"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
8 <command detect_errors="exit_code"><![CDATA[
3
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
9 mkdir -p logex_ktabs &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
10 mkdir -p input_files &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
11 #if $input_type.input_type_selector != 'collection'
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
12 cp '$input_ktab1' input_files/input1.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
13 ln -s '$input_ktab1_tar' input1.tar &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
14 tar -xf input1.tar &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
15 mv ktabfiles ktabfiles_in1 &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
16 mv "\$(find ktabfiles_in1 -type f -name '*.ktab.1')" "ktabfiles_in1/.input1.ktab.1" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
17 cp '$input_ktab2' input_files/input2.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
18 ln -s '$input_ktab2_tar' input2.tar &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
19 tar -xf input2.tar &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
20 mv ktabfiles ktabfiles_in2 &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
21 mv "\$(find ktabfiles_in2 -type f -name '*.ktab.1')" "ktabfiles_in2/.input2.ktab.1" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
22 mv ktabfiles_in1/.input1.ktab.1 input_files/ &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
23 mv ktabfiles_in2/.input2.ktab.1 input_files/ &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
24 #if $input_type.operation_selector == 'and'
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
25 Logex -T\${GALAXY_SLOTS:-8} -h 'out = A&.B' input_files/input1.ktab input_files/input2.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
26 #elif $input_type.operation_selector == 'or'
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
27 Logex -T\${GALAXY_SLOTS:-8} -h 'out = A|.B' input_files/input1.ktab input_files/input2.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
28 #elif $input_type.operation_selector == 'minus'
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
29 Logex -T\${GALAXY_SLOTS:-8} -h 'out = A-B' input_files/input1.ktab input_files/input2.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
30 #elif $input_type.operation_selector == 'xor'
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
31 Logex -T\${GALAXY_SLOTS:-8} -h 'out = A^B' input_files/input1.ktab input_files/input2.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
32 #elif $input_type.operation_selector == 'unionsum'
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
33 Logex -T\${GALAXY_SLOTS:-8} -h 'out = A&+B' input_files/input1.ktab input_files/input2.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
34 #end if
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
35 #else
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
36 #for $i, $j in enumerate($input_type.input_ktab_collection):
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
37 cp "$j" input_files/${i+1}.ktab &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
38 #end for
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
39 #for $p, $q in enumerate($input_type.input_ktab_collection_tar):
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
40 ln -s "$q" input_files/input_ktab_${p+1}.tar &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
41 tar -tf input_files/input_ktab_${p+1}.tar | grep '/\.[^/]*$' | tar --strip-components=1 -xf input_files/input_ktab_${p+1}.tar -C input_files/ -T - &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
42 rm input_files/input_ktab_${p+1}.tar &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
43 #end for
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
44 COUNT=\$(ls -1 input_files/*.ktab 2>/dev/null | wc -l) &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
45 if [ "\$COUNT" -ge 2 ]; then
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
46 #if $input_type.operation_sel.operation_selector_collection == 'unionsum':
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
47 EXPRESSION="out=\$(seq -s '&+' 0 \$((COUNT-1)) | tr '0-9' 'A-Z')" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
48 #elif $input_type.operation_sel.operation_selector_collection == 'and':
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
49 EXPRESSION="out=\$(seq -s '&.' 0 \$((COUNT-1)) | tr '0-9' 'A-Z')" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
50 #elif $input_type.operation_sel.operation_selector_collection == 'minus':
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
51 EXPRESSION="out=\$(seq -s '-' 0 \$((COUNT-1)) | tr '0-9' 'A-Z')" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
52 #elif $input_type.operation_sel.operation_selector_collection == 'or':
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
53 EXPRESSION="out=\$(seq -s '|.' 0 \$((COUNT-1)) | tr '0-9' 'A-Z')" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
54 #elif $input_type.operation_sel.operation_selector_collection == 'xor':
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
55 EXPRESSION="out=\$(seq -s '^' 0 \$((COUNT-1)) | tr '0-9' 'A-Z')" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
56 #elif $input_type.operation_sel.operation_selector_collection == 'custom':
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
57 EXPRESSION="out=$input_type.operation_sel.custom_expression" &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
58 #end if
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
59 Logex -T\${GALAXY_SLOTS:-8} -h "\$EXPRESSION" input_files/*.ktab;
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
60 else
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
61 echo "ERROR: Logex needs atleast 2 Ktab files" >&2 && exit 1;
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
62 fi &&
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
63 #end if
3
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
64 cp *.ktab logex_ktabs/ &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
65 cp .*.ktab* logex_ktabs/ &&
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
66 tar -cf logex_ktab.tar input_files/ logex_ktabs/
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
67 ]]></command>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
68 <inputs>
3
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
69 <conditional name="input_type">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
70 <param name="input_type_selector" type="select" label="Single Ktab file or Ktab Collection">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
71 <option value="single">Single Ktab file</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
72 <option value="collection">Ktab files Collection</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
73 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
74 <when value="single">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
75 <param name="input_ktab1" type="data" format="fastk_ktab" label="Input FastK ktab file (first)"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
76 <param name="input_ktab1_tar" type="data" format="fastk_ktab_tar" label="Associated FastK TAR file consisting of intermediate .ktab files"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
77 <param name="input_ktab2" type="data" format="fastk_ktab" label="Input FastK ktab file (second)"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
78 <param name="input_ktab2_tar" type="data" format="fastk_ktab_tar" label="Associated FastK TAR file consisting of intermediate .ktab files"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
79 <param name="operation_selector" type="select" label="Select Operation to Perform" help="Select the operation to be performed on the input ktab files.">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
80 <option value="and">AND</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
81 <option value="or">OR</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
82 <option value="minus">Minus</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
83 <option value="unionsum">Unionsum</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
84 <option value="xor">XOR</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
85 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
86 </when>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
87 <when value="collection">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
88 <param name="input_ktab_collection" type="data_collection" collection_type="list" format="fastk_ktab" label="Input FastK ktab Collection"/>
4
94217ea28453 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 24dc6373560bd5e409fca84154634f5a528001c3
iuc
parents: 3
diff changeset
89 <param name="input_ktab_collection_tar" type="data_collection" collection_type="list" format="fastk_ktab_tar" label="Associated FastK TAR file consisting of intermediate .ktab files"/>
3
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
90 <conditional name="operation_sel">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
91 <param name="operation_selector_collection" type="select" label="Select Operation to Perform" help="Select the operation to be performed on the input ktab files.">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
92 <option value="and">AND</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
93 <option value="or">OR</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
94 <option value="minus">Minus</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
95 <option value="unionsum">Unionsum</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
96 <option value="xor">XOR</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
97 <option value="custom">Custom Logical Expression</option>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
98 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
99 <when value="and"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
100 <when value="or"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
101 <when value="minus"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
102 <when value="unionsum"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
103 <when value="xor"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
104 <when value="custom">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
105 <param name="custom_expression" type="text" label="Custom Logical Expression" value="out=" help="Enter a custom logical expression based on number of your input ktab files. For Eg: For 3 Ktab files the expression can be out=(A^B)-C">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
106 <sanitizer invalid_char="">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
107 <valid>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
108 <add value="+"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
109 <add value="-"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
110 <add value="|"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
111 <add value="."/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
112 <add value="^"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
113 <add value="="/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
114 <add value="&amp;"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
115 </valid>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
116 </sanitizer>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
117 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
118 </when>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
119 </conditional>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
120 </when>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
121 </conditional>
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
122 </inputs>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
123 <outputs>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
124 <data name="fastk_hist_out" format="fastk_hist" from_work_dir="out.hist" label="${tool.name} on ${on_string}: Logex .hist file"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
125 <data name="fastk_ktab_out" format="fastk_ktab" from_work_dir="out.ktab" label="${tool.name} on ${on_string}: Logex .ktab file"/>
2
ec82f2b95e89 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit de98c1736ab624bff379c3e83ccfc19cb2995684
iuc
parents: 1
diff changeset
126 <data name="fastk_ktab_files" format="fastk_ktab_tar" from_work_dir="logex_ktab.tar" label="${tool.name} on ${on_string}: FastK Logex ktab files"/>
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
127 </outputs>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
128 <tests>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
129 <test expect_num_outputs="3">
3
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
130 <conditional name="input_type">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
131 <param name="input_type_selector" value="single"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
132 <param name="input_ktab1" value="fastq1.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
133 <param name="input_ktab1_tar" value="fastk_in1.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
134 <param name="input_ktab2" value="fastq2.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
135 <param name="input_ktab2_tar" value="fastk_in2.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
136 <param name="operation_selector" value="and"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
137 </conditional>
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
138 <output name="fastk_hist_out" ftype="fastk_hist">
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
139 <assert_contents>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
140 <has_size value="262164"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
141 </assert_contents>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
142 </output>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
143 <output name="fastk_ktab_out" ftype="fastk_ktab">
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
144 <assert_contents>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
145 <has_size value="2064"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
146 </assert_contents>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
147 </output>
2
ec82f2b95e89 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit de98c1736ab624bff379c3e83ccfc19cb2995684
iuc
parents: 1
diff changeset
148 <output name="fastk_ktab_files" ftype="fastk_ktab_tar">
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
149 <assert_contents>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
150 <has_archive_member path="logex_ktabs/out.ktab"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
151 <has_archive_member path="logex_ktabs/.out.ktab.1"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
152 <has_archive_member path="input_files/input1.ktab"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
153 <has_archive_member path="input_files/.input1.ktab.1"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
154 <has_archive_member path="input_files/input2.ktab"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
155 <has_archive_member path="input_files/.input2.ktab.1"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
156 </assert_contents>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
157 </output>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
158 </test>
3
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
159 <test expect_num_outputs="3">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
160 <conditional name="input_type">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
161 <param name="input_type_selector" value="collection"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
162 <param name="input_ktab_collection">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
163 <collection type="list">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
164 <element name="input1" value="fastq1.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
165 <element name="input2" value="fastq2.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
166 </collection>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
167 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
168 <param name="input_ktab_collection_tar">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
169 <collection type="list">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
170 <element name="input1" value="fastk_in1.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
171 <element name="input2" value="fastk_in2.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
172 </collection>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
173 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
174 <conditional name="operation_sel">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
175 <param name="operation_selector_collection" value="and"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
176 </conditional>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
177 </conditional>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
178 <output name="fastk_hist_out" ftype="fastk_hist">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
179 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
180 <has_size value="262164"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
181 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
182 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
183 <output name="fastk_ktab_out" ftype="fastk_ktab">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
184 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
185 <has_size value="2064"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
186 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
187 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
188 <output name="fastk_ktab_files" ftype="fastk_ktab_tar">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
189 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
190 <has_archive_member path="logex_ktabs/out.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
191 <has_archive_member path="logex_ktabs/.out.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
192 <has_archive_member path="input_files/1.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
193 <has_archive_member path="input_files/.1.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
194 <has_archive_member path="input_files/2.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
195 <has_archive_member path="input_files/.2.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
196 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
197 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
198 </test>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
199 <test expect_num_outputs="3">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
200 <conditional name="input_type">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
201 <param name="input_type_selector" value="collection"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
202 <param name="input_ktab_collection">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
203 <collection type="list">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
204 <element name="input1" value="fastq1.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
205 <element name="input2" value="fastq2.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
206 </collection>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
207 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
208 <param name="input_ktab_collection_tar">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
209 <collection type="list">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
210 <element name="input1" value="fastk_in1.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
211 <element name="input2" value="fastk_in2.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
212 </collection>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
213 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
214 <conditional name="operation_sel">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
215 <param name="operation_selector_collection" value="unionsum"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
216 </conditional>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
217 </conditional>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
218 <output name="fastk_hist_out" ftype="fastk_hist">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
219 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
220 <has_size value="262164"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
221 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
222 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
223 <output name="fastk_ktab_out" ftype="fastk_ktab">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
224 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
225 <has_size value="2064"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
226 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
227 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
228 <output name="fastk_ktab_files" ftype="fastk_ktab_tar">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
229 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
230 <has_archive_member path="logex_ktabs/out.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
231 <has_archive_member path="logex_ktabs/.out.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
232 <has_archive_member path="input_files/1.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
233 <has_archive_member path="input_files/.1.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
234 <has_archive_member path="input_files/2.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
235 <has_archive_member path="input_files/.2.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
236 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
237 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
238 </test>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
239 <test expect_num_outputs="3">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
240 <conditional name="input_type">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
241 <param name="input_type_selector" value="collection"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
242 <param name="input_ktab_collection">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
243 <collection type="list">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
244 <element name="input1" value="fastq1.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
245 <element name="input2" value="fastq2.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
246 </collection>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
247 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
248 <param name="input_ktab_collection_tar">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
249 <collection type="list">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
250 <element name="input1" value="fastk_in1.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
251 <element name="input2" value="fastk_in2.tar"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
252 </collection>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
253 </param>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
254 <conditional name="operation_sel">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
255 <param name="operation_selector_collection" value="custom"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
256 <param name="custom_expression" value="A&amp;.B"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
257 </conditional>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
258 </conditional>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
259 <output name="fastk_hist_out" ftype="fastk_hist">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
260 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
261 <has_size value="262164"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
262 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
263 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
264 <output name="fastk_ktab_out" ftype="fastk_ktab">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
265 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
266 <has_size value="2064"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
267 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
268 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
269 <output name="fastk_ktab_files" ftype="fastk_ktab_tar">
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
270 <assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
271 <has_archive_member path="logex_ktabs/out.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
272 <has_archive_member path="logex_ktabs/.out.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
273 <has_archive_member path="input_files/1.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
274 <has_archive_member path="input_files/.1.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
275 <has_archive_member path="input_files/2.ktab"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
276 <has_archive_member path="input_files/.2.ktab.1"/>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
277 </assert_contents>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
278 </output>
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
279 </test>
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
280 </tests>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
281 <help><![CDATA[
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
282
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
283 Logex tool can perform operations such as AND, OR, XOR, Minus and Unionsum on the input given input Ktab files.
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
284
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
285 The tool requires two input Ktab files and their associated files (Generated in the tarball of FASTK tool with .1 extension) as inputs to perform various binary operations.
3
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
286
9b1aebbaec34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 814017d155da225181f3b41c25f99f4c23f03835
iuc
parents: 2
diff changeset
287 The tool also supports Ktab file collections as input. The user can select the operation to be performed on the input Ktab files.
0
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
288
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
289 ]]></help>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
290 <expand macro="citations"/>
73ddd200456a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608
iuc
parents:
diff changeset
291 </tool>