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comparison macros.xml @ 15:a626e8c0e1ba draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 17a0a67dfbc7541a7fe3618cfbbb71d814042889
author iuc
date Fri, 15 Nov 2024 15:31:53 +0000
parents ecb9f4854617
children
comparison
equal deleted inserted replaced
14:ecb9f4854617 15:a626e8c0e1ba
59 <xml name="detect_adapter_for_pe"> 59 <xml name="detect_adapter_for_pe">
60 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" /> 60 <param argument="--detect_adapter_for_pe" type="boolean" truevalue="--detect_adapter_for_pe" falsevalue="" checked="false" label="Adapter sequence auto-detection for paired-end" />
61 </xml> 61 </xml>
62 62
63 <xml name="in" token_read_number="1" token_argument="-i"> 63 <xml name="in" token_read_number="1" token_argument="-i">
64 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz,fastqillumina,fastqillumina.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> 64 <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/>
65 </xml> 65 </xml>
66 66
67 <xml name="poly_g_min_len"> 67 <xml name="poly_g_min_len">
68 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" 68 <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length"
69 help="The minimum length to detect polyG in the read tail. 10 by default."/> 69 help="The minimum length to detect polyG in the read tail. 10 by default."/>
70 </xml> 70 </xml>
71
72 <xml name="format_actions" token_read_number="1" token_forward_reverse="forward">
73 <actions>
74 <conditional name="single_paired.single_paired_selector">
75 <when value="paired">
76 <action type="format">
77 <option type="from_param" name="single_paired.in@READ_NUMBER@" param_attribute="ext" />
78 </action>
79 </when>
80 <when value="paired_collection">
81 <action type="format">
82 <option type="from_param" name="single_paired.paired_input" param_attribute="@FORWARD_REVERSE@.ext" />
83 </action>
84 </when>
85 </conditional>
86 </actions>
87 </xml>
71 </macros> 88 </macros>