Mercurial > repos > iuc > fastreer_dist2tree

diff fastreer_dist2tree.xml @ 0:a21e02af4488 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
author: iuc
date: Mon, 03 Nov 2025 09:27:29 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fastreer_dist2tree.xml	Mon Nov 03 09:27:29 2025 +0000
@@ -0,0 +1,30 @@
+<tool id="fastreer_dist2tree" name="DIST2TREE" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>Newick tree from distance matrix</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="version_command"/>
+    <command detect_errors="exit_code"><![CDATA[
+        fastreeR DIST2TREE 
+        -i '$dist_input' 
+        -o '$output'
+        --verbose
+    ]]></command>  
+    <inputs>
+        <param name="dist_input" type="data" format="txt" label="Input Distance Matrix" help="Input Distance Matrix"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="newick" label="Output Newick Tree"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="dist_input" value="test.dist"/>
+            <output name="output" file="expected.dist.nwk"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        Builds a Newick tree from a PHYLIP-compatible distance matrix.
+    ]]></help>
+    <expand macro="citations"/>
+</tool>
\ No newline at end of file