view fastreer_dist2tree.xml @ 0:a21e02af4488 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
author iuc
date Mon, 03 Nov 2025 09:27:29 +0000
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<tool id="fastreer_dist2tree" name="DIST2TREE" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>Newick tree from distance matrix</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[
        fastreeR DIST2TREE 
        -i '$dist_input' 
        -o '$output'
        --verbose
    ]]></command>  
    <inputs>
        <param name="dist_input" type="data" format="txt" label="Input Distance Matrix" help="Input Distance Matrix"/>
    </inputs>
    <outputs>
        <data name="output" format="newick" label="Output Newick Tree"/>
    </outputs>
    <tests>
        <test>
            <param name="dist_input" value="test.dist"/>
            <output name="output" file="expected.dist.nwk"/>
        </test>
    </tests>
    <help><![CDATA[
        Builds a Newick tree from a PHYLIP-compatible distance matrix.
    ]]></help>
    <expand macro="citations"/>
</tool>