Mercurial > repos > iuc > fastreer_dist2tree

annotate fastreer_dist2tree.xml @ 0:a21e02af4488 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
author iuc
date Mon, 03 Nov 2025 09:27:29 +0000
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a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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1 <tool id="fastreer_dist2tree" name="DIST2TREE" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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2 <description>Newick tree from distance matrix</description>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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3 <macros>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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4 <import>macros.xml</import>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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5 </macros>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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6 <expand macro="requirements"/>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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7 <expand macro="version_command"/>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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8 <command detect_errors="exit_code"><![CDATA[
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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9 fastreeR DIST2TREE
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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10 -i '$dist_input'
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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11 -o '$output'
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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12 --verbose
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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13 ]]></command>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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14 <inputs>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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15 <param name="dist_input" type="data" format="txt" label="Input Distance Matrix" help="Input Distance Matrix"/>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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16 </inputs>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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17 <outputs>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
iuc
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18 <data name="output" format="newick" label="Output Newick Tree"/>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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19 </outputs>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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20 <tests>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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21 <test>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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22 <param name="dist_input" value="test.dist"/>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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23 <output name="output" file="expected.dist.nwk"/>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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24 </test>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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25 </tests>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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26 <help><![CDATA[
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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27 Builds a Newick tree from a PHYLIP-compatible distance matrix.
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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28 ]]></help>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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29 <expand macro="citations"/>
a21e02af4488 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer commit 6e38d3e17b87a9e9804bd90fa2dba708c2361a0b
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30 </tool>