Mercurial > repos > iuc > feelnc
changeset 1:17a77824c8e4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/feelnc commit 1b1520d42f96f78662e75bce1e899a57b052ec1e
| author | iuc |
|---|---|
| date | Wed, 25 Apr 2018 15:55:19 -0400 |
| parents | b36afbb04e1c |
| children | 75427ceb32d1 |
| files | feelnc_wrapper.xml test-data/candidate_lncRNA.classifier.txt |
| diffstat | 2 files changed, 416 insertions(+), 4 deletions(-) [+] |
line wrap: on
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--- a/feelnc_wrapper.xml Wed Mar 28 13:14:02 2018 -0400 +++ b/feelnc_wrapper.xml Wed Apr 25 15:55:19 2018 -0400 @@ -1,16 +1,20 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="feelnc" name="FEELnc" profile="17.01" version="0.1.1"> +<tool id="feelnc" name="FEELnc" profile="17.01" version="0.1.1.1"> <description>FlExible Extraction of LncRNA</description> <requirements> <requirement type="package" version="0.1.1">feelnc</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ -FEELnc_pipeline.sh +FEELnc_pipeline.sh --candidate='${transcripts}' --reference='${annotation}' ---genome='${genome}' +--genome='${genome}' --outname='candidate_lncRNA' --outdir='out_feelnc' + +&& + +cat out_feelnc/codpot/candidate_lncRNA.codpot_RF_summary.txt out_feelnc/classifier/candidate_lncRNA.classifier.log ]]></command> <inputs> <param name="transcripts" argument="--candidate" type="data" format="gtf" label="Transcripts assembly" help="Stringtie or Cufflinks output" /> @@ -20,6 +24,7 @@ <outputs> <data format="gtf" name="candidate_lncRNA" from_work_dir="out_feelnc/codpot/candidate_lncRNA.codpot.lncRNA.gtf" label="lncRNA annotation with ${tool.name} on ${on_string}" /> <data format="gtf" name="candidate_mRNA" from_work_dir="out_feelnc/codpot/candidate_lncRNA.codpot.mRNA.gtf" label="mRNA annotation with ${tool.name} on ${on_string}" /> + <data format="txt" name="classifier" from_work_dir="out_feelnc/classifier/candidate_lncRNA.classifier.txt" label="Classifier output with ${tool.name} on ${on_string}" /> </outputs> <tests> <test> @@ -28,12 +33,13 @@ <param name="genome" value="genome_chr38.fa" /> <output name="candidate_lncRNA" file="candidate_lncRNA.gtf.lncRNA-sort.gtf" sort="True" /> <output name="candidate_mRNA" file="candidate_lncRNA.gtf.mRNA-sort.gtf" sort="True" /> + <output name="classifier" file="candidate_lncRNA.classifier.txt" compare="sim_size" /> </test> </tests> <help><![CDATA[ **What it does** -FEELnc pipeline is used to annotate long non-coding RNAs (lncRNAs) based on reconstructed transcripts from RNA-seq data (either with or without a reference genome). +FEELnc pipeline is used to annotate long non-coding RNAs (lncRNAs) based on reconstructed transcripts from RNA-seq data (either with or without a reference genome). --------
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/candidate_lncRNA.classifier.txt Wed Apr 25 15:55:19 2018 -0400 @@ -0,0 +1,406 @@ +isBest lncRNA_gene lncRNA_transcript partnerRNA_gene partnerRNA_transcript direction type distance subtype location +1 XLOC_090599 TCONS_00231415 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 8145 same_strand downstream +1 XLOC_090738 TCONS_00232020 ENSCAFG00000013491 ENSCAFT00000021392 sense intergenic 6860 same_strand downstream +1 XLOC_090744 TCONS_00232064 ENSCAFG00000013336 ENSCAFT00000021179 sense intergenic 28636 same_strand upstream +1 XLOC_090744 TCONS_00232060 ENSCAFG00000013346 ENSCAFT00000021186 antisense intergenic 32820 divergent upstream +0 XLOC_090744 TCONS_00232060 ENSCAFG00000013336 ENSCAFT00000021179 sense intergenic 35060 same_strand upstream +1 XLOC_090795 TCONS_00232275 ENSCAFG00000012566 ENSCAFT00000019952 antisense intergenic 24437 convergent downstream +0 XLOC_090795 TCONS_00232275 ENSCAFG00000023704 ENSCAFT00000036617 sense intergenic 26617 same_strand downstream +1 XLOC_090752 TCONS_00232087 ENSCAFG00000013259 ENSCAFT00000021052 antisense intergenic 3325 divergent upstream +1 XLOC_090831 TCONS_00232408 ENSCAFG00000011692 ENSCAFT00000018544 sense intergenic 12346 same_strand upstream +0 XLOC_090831 TCONS_00232408 ENSCAFG00000011706 ENSCAFT00000018594 antisense intergenic 14517 divergent upstream +1 XLOC_090599 TCONS_00231412 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090849 TCONS_00232436 ENSCAFG00000030554 ENSCAFT00000018156 antisense intergenic 6167 divergent upstream +0 XLOC_090849 TCONS_00232436 ENSCAFG00000030554 ENSCAFT00000018170 antisense intergenic 7092 divergent upstream +1 XLOC_091057 TCONS_00233513 ENSCAFG00000023704 ENSCAFT00000036617 antisense intergenic 24758 convergent downstream +0 XLOC_091057 TCONS_00233513 ENSCAFG00000012566 ENSCAFT00000019952 sense intergenic 26122 same_strand downstream +1 XLOC_090599 TCONS_00231416 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 8242 same_strand downstream +1 XLOC_090878 TCONS_00232600 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090628 TCONS_00231554 ENSCAFG00000025208 ENSCAFT00000039078 antisense intergenic 1622 divergent upstream +0 XLOC_090628 TCONS_00231554 ENSCAFG00000010051 ENSCAFT00000015981 sense intergenic 4505 same_strand upstream +1 XLOC_090726 TCONS_00231956 ENSCAFG00000013637 ENSCAFT00000021622 sense intergenic 74091 same_strand upstream +1 XLOC_090743 TCONS_00232054 ENSCAFG00000013346 ENSCAFT00000021186 antisense genic 0 overlapping intronic +1 XLOC_090727 TCONS_00231958 ENSCAFG00000013637 ENSCAFT00000021622 sense genic 0 containing intronic +1 XLOC_090743 TCONS_00232058 ENSCAFG00000013346 ENSCAFT00000021186 antisense intergenic 377 divergent upstream +1 XLOC_090660 TCONS_00231733 ENSCAFG00000010552 ENSCAFT00000016789 antisense genic 0 overlapping intronic +0 XLOC_090660 TCONS_00231733 ENSCAFG00000010573 ENSCAFT00000016817 sense intergenic 4547 same_strand upstream +1 XLOC_090599 TCONS_00231410 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090744 TCONS_00232061 ENSCAFG00000013336 ENSCAFT00000021179 sense intergenic 28636 same_strand upstream +1 XLOC_090599 TCONS_00231402 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_091060 TCONS_00233538 ENSCAFG00000023513 ENSCAFT00000036175 sense intergenic 369 same_strand downstream +1 XLOC_090894 TCONS_00232667 ENSCAFG00000010137 ENSCAFT00000016099 antisense intergenic 2168 divergent upstream +0 XLOC_090894 TCONS_00232667 ENSCAFG00000010109 ENSCAFT00000016064 antisense intergenic 3957 convergent downstream +1 XLOC_091083 TCONS_00233600 ENSCAFG00000031934 ENSCAFT00000048683 sense intergenic 4985 same_strand upstream +1 XLOC_090801 TCONS_00232316 ENSCAFG00000012174 ENSCAFT00000019707 antisense genic 0 nested exonic +1 XLOC_090970 TCONS_00232964 ENSCAFG00000021604 ENSCAFT00000033711 sense intergenic 5524 same_strand upstream +1 XLOC_091031 TCONS_00233349 ENSCAFG00000013035 ENSCAFT00000020678 sense intergenic 5141 same_strand upstream +0 XLOC_091031 TCONS_00233349 ENSCAFG00000013035 ENSCAFT00000020677 sense intergenic 5373 same_strand upstream +1 XLOC_090634 TCONS_00231594 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2408 divergent upstream +1 XLOC_090989 TCONS_00233036 ENSCAFG00000011340 ENSCAFT00000018023 antisense intergenic 5988 convergent downstream +1 XLOC_091060 TCONS_00233539 ENSCAFG00000023513 ENSCAFT00000036175 sense intergenic 369 same_strand downstream +1 XLOC_090674 TCONS_00231787 ENSCAFG00000010731 ENSCAFT00000017072 antisense genic 0 nested intronic +1 XLOC_090732 TCONS_00231965 ENSCAFG00000013620 ENSCAFT00000021590 antisense intergenic 1483 divergent upstream +0 XLOC_090732 TCONS_00231965 ENSCAFG00000013601 ENSCAFT00000021570 sense intergenic 9792 same_strand upstream +0 XLOC_090732 TCONS_00231965 ENSCAFG00000013601 ENSCAFT00000021557 sense intergenic 9590 same_strand upstream +1 XLOC_090915 TCONS_00232763 ENSCAFG00000029799 ENSCAFT00000046901 antisense intergenic 1058 divergent upstream +0 XLOC_090915 TCONS_00232763 ENSCAFG00000010239 ENSCAFT00000016260 antisense intergenic 1870 convergent downstream +1 XLOC_090960 TCONS_00232947 ENSCAFG00000010794 ENSCAFT00000017171 antisense intergenic 99842 convergent downstream +1 XLOC_090688 TCONS_00231843 ENSCAFG00000010839 ENSCAFT00000017231 sense intergenic 51002 same_strand downstream +1 XLOC_090994 TCONS_00233059 ENSCAFG00000013627 ENSCAFT00000021613 sense intergenic 10677 same_strand downstream +1 XLOC_091067 TCONS_00233568 ENSCAFG00000028933 ENSCAFT00000050050 antisense intergenic 3324 divergent upstream +0 XLOC_091067 TCONS_00233568 ENSCAFG00000028933 ENSCAFT00000048290 antisense intergenic 6333 divergent upstream +0 XLOC_091067 TCONS_00233568 ENSCAFG00000012174 ENSCAFT00000019707 sense intergenic 7282 same_strand upstream +1 XLOC_090640 TCONS_00231611 ENSCAFG00000010206 ENSCAFT00000016203 antisense intergenic 1555 convergent downstream +1 XLOC_090878 TCONS_00232593 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090620 TCONS_00231540 ENSCAFG00000009999 ENSCAFT00000015918 antisense genic 0 overlapping intronic +1 XLOC_090678 TCONS_00231794 ENSCAFG00000010781 ENSCAFT00000017154 antisense genic 0 overlapping intronic +0 XLOC_090678 TCONS_00231794 ENSCAFG00000010794 ENSCAFT00000017171 sense intergenic 8293 same_strand upstream +0 XLOC_090678 TCONS_00231794 ENSCAFG00000010781 ENSCAFT00000017151 antisense genic 0 nested intronic +1 XLOC_090878 TCONS_00232602 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090953 TCONS_00232918 ENSCAFG00000025753 ENSCAFT00000040036 antisense intergenic 18909 divergent upstream +1 XLOC_090985 TCONS_00233030 ENSCAFG00000011166 ENSCAFT00000017746 sense intergenic 10280 same_strand downstream +1 XLOC_090878 TCONS_00232594 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090974 TCONS_00232971 ENSCAFG00000010842 ENSCAFT00000017240 sense intergenic 85066 same_strand downstream +1 XLOC_090892 TCONS_00232659 ENSCAFG00000020616 ENSCAFT00000032723 sense intergenic 3521 same_strand downstream +0 XLOC_090892 TCONS_00232659 ENSCAFG00000010051 ENSCAFT00000015981 antisense intergenic 6524 convergent downstream +1 XLOC_090992 TCONS_00233057 ENSCAFG00000013637 ENSCAFT00000021622 antisense intergenic 68598 convergent downstream +1 XLOC_090860 TCONS_00232464 ENSCAFG00000009459 ENSCAFT00000015038 sense intergenic 24831 same_strand upstream +0 XLOC_090860 TCONS_00232464 ENSCAFG00000009462 ENSCAFT00000015041 antisense intergenic 29095 divergent upstream +1 XLOC_090606 TCONS_00231450 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231450 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_090707 TCONS_00231910 ENSCAFG00000011325 ENSCAFT00000018005 antisense intergenic 6195 divergent upstream +0 XLOC_090707 TCONS_00231910 ENSCAFG00000031609 ENSCAFT00000047625 sense intergenic 9383 same_strand downstream +1 XLOC_090752 TCONS_00232085 ENSCAFG00000013259 ENSCAFT00000021052 antisense intergenic 3324 divergent upstream +1 XLOC_090743 TCONS_00232055 ENSCAFG00000013346 ENSCAFT00000021186 antisense intergenic 371 divergent upstream +1 XLOC_090599 TCONS_00231413 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090794 TCONS_00232274 ENSCAFG00000023704 ENSCAFT00000036617 sense intergenic 7324 same_strand downstream +1 XLOC_090732 TCONS_00231967 ENSCAFG00000013620 ENSCAFT00000021590 antisense intergenic 2151 divergent upstream +0 XLOC_090732 TCONS_00231967 ENSCAFG00000013601 ENSCAFT00000021570 sense intergenic 9792 same_strand upstream +0 XLOC_090732 TCONS_00231967 ENSCAFG00000013601 ENSCAFT00000021557 sense intergenic 9590 same_strand upstream +1 XLOC_090732 TCONS_00231964 ENSCAFG00000013620 ENSCAFT00000021590 antisense intergenic 1471 divergent upstream +0 XLOC_090732 TCONS_00231964 ENSCAFG00000013601 ENSCAFT00000021557 sense intergenic 9590 same_strand upstream +0 XLOC_090732 TCONS_00231964 ENSCAFG00000013601 ENSCAFT00000021570 sense intergenic 9792 same_strand upstream +1 XLOC_090788 TCONS_00232240 ENSCAFG00000012579 ENSCAFT00000019982 sense intergenic 1068 same_strand downstream +1 XLOC_090683 TCONS_00231828 ENSCAFG00000010815 ENSCAFT00000017213 sense intergenic 19267 same_strand downstream +1 XLOC_090720 TCONS_00231944 ENSCAFG00000026373 ENSCAFT00000040656 sense intergenic 66670 same_strand upstream +1 XLOC_090854 TCONS_00232456 ENSCAFG00000031030 ENSCAFT00000045878 antisense genic 0 nested exonic +0 XLOC_090854 TCONS_00232456 ENSCAFG00000011368 ENSCAFT00000018059 sense genic 0 nested intronic +0 XLOC_090854 TCONS_00232456 ENSCAFG00000011358 ENSCAFT00000018051 antisense intergenic 7271 convergent downstream +0 XLOC_090854 TCONS_00232456 ENSCAFG00000011358 ENSCAFT00000049302 antisense intergenic 6622 convergent downstream +1 XLOC_090743 TCONS_00232057 ENSCAFG00000013346 ENSCAFT00000021186 antisense intergenic 377 divergent upstream +1 XLOC_090726 TCONS_00231955 ENSCAFG00000013637 ENSCAFT00000021622 sense intergenic 60824 same_strand upstream +1 XLOC_090802 TCONS_00232318 ENSCAFG00000012174 ENSCAFT00000019707 antisense intergenic 576 divergent upstream +0 XLOC_090802 TCONS_00232318 ENSCAFG00000028933 ENSCAFT00000050050 sense intergenic 779 same_strand upstream +0 XLOC_090802 TCONS_00232318 ENSCAFG00000032332 ENSCAFT00000047817 antisense intergenic 8255 convergent downstream +0 XLOC_090802 TCONS_00232318 ENSCAFG00000028933 ENSCAFT00000048290 sense intergenic 3788 same_strand upstream +1 XLOC_091027 TCONS_00233310 ENSCAFG00000032051 ENSCAFT00000036830 sense intergenic 8387 same_strand downstream +0 XLOC_091027 TCONS_00233310 ENSCAFG00000013058 ENSCAFT00000020714 sense intergenic 9113 same_strand upstream +1 XLOC_091025 TCONS_00233261 ENSCAFG00000013079 ENSCAFT00000020753 antisense intergenic 3412 convergent downstream +0 XLOC_091025 TCONS_00233261 ENSCAFG00000013068 ENSCAFT00000020736 sense intergenic 7803 same_strand downstream +1 XLOC_090615 TCONS_00231491 ENSCAFG00000009901 ENSCAFT00000046245 sense intergenic 44590 same_strand upstream +1 XLOC_090785 TCONS_00232223 ENSCAFG00000012621 ENSCAFT00000020056 antisense intergenic 6479 divergent upstream +1 XLOC_090763 TCONS_00232140 ENSCAFG00000012997 ENSCAFT00000020633 sense intergenic 37730 same_strand upstream +1 XLOC_090817 TCONS_00232386 ENSCAFG00000011795 ENSCAFT00000018715 antisense genic 0 overlapping exonic +1 XLOC_090878 TCONS_00232595 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090606 TCONS_00231441 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 overlapping exonic +0 XLOC_090606 TCONS_00231441 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 486 divergent upstream +1 XLOC_090683 TCONS_00231829 ENSCAFG00000010815 ENSCAFT00000017213 sense intergenic 19283 same_strand downstream +1 XLOC_090758 TCONS_00232115 ENSCAFG00000013086 ENSCAFT00000020761 antisense genic 0 overlapping intronic +1 XLOC_090993 TCONS_00233058 ENSCAFG00000013627 ENSCAFT00000021613 sense intergenic 73088 same_strand downstream +1 XLOC_090849 TCONS_00232437 ENSCAFG00000030554 ENSCAFT00000018156 antisense intergenic 6167 divergent upstream +0 XLOC_090849 TCONS_00232437 ENSCAFG00000030554 ENSCAFT00000018170 antisense intergenic 7092 divergent upstream +1 XLOC_090818 TCONS_00232387 ENSCAFG00000031934 ENSCAFT00000048683 antisense intergenic 2535 divergent upstream +1 XLOC_090691 TCONS_00231848 ENSCAFG00000021604 ENSCAFT00000033711 antisense intergenic 39885 divergent upstream +1 XLOC_090763 TCONS_00232139 ENSCAFG00000012997 ENSCAFT00000020633 sense intergenic 43579 same_strand upstream +0 XLOC_090763 TCONS_00232139 ENSCAFG00000013015 ENSCAFT00000020665 sense intergenic 49540 same_strand downstream +0 XLOC_090763 TCONS_00232139 ENSCAFG00000012992 ENSCAFT00000020626 antisense intergenic 49059 convergent downstream +0 XLOC_090763 TCONS_00232139 ENSCAFG00000012992 ENSCAFT00000020625 antisense intergenic 49065 convergent downstream +1 XLOC_090849 TCONS_00232438 ENSCAFG00000030554 ENSCAFT00000018156 antisense intergenic 7271 divergent upstream +0 XLOC_090849 TCONS_00232438 ENSCAFG00000030554 ENSCAFT00000018170 antisense intergenic 8196 divergent upstream +1 XLOC_091060 TCONS_00233537 ENSCAFG00000023513 ENSCAFT00000036175 sense intergenic 4235 same_strand downstream +1 XLOC_090849 TCONS_00232433 ENSCAFG00000030554 ENSCAFT00000018156 antisense intergenic 6167 divergent upstream +0 XLOC_090849 TCONS_00232433 ENSCAFG00000030554 ENSCAFT00000018170 antisense intergenic 7092 divergent upstream +1 XLOC_090892 TCONS_00232661 ENSCAFG00000020616 ENSCAFT00000032723 sense genic 0 containing intronic +0 XLOC_090892 TCONS_00232661 ENSCAFG00000010051 ENSCAFT00000015981 antisense intergenic 6524 convergent downstream +1 XLOC_090961 TCONS_00232948 ENSCAFG00000010835 ENSCAFT00000017226 antisense intergenic 16040 divergent upstream +1 XLOC_090652 TCONS_00231713 ENSCAFG00000021533 ENSCAFT00000033640 antisense intergenic 28415 convergent downstream +1 XLOC_090970 TCONS_00232966 ENSCAFG00000021604 ENSCAFT00000033711 sense intergenic 5524 same_strand upstream +1 XLOC_090599 TCONS_00231419 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 8242 same_strand downstream +1 XLOC_090606 TCONS_00231443 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 overlapping exonic +0 XLOC_090606 TCONS_00231443 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 642 divergent upstream +1 XLOC_090892 TCONS_00232660 ENSCAFG00000020616 ENSCAFT00000032723 sense genic 0 containing exonic +0 XLOC_090892 TCONS_00232660 ENSCAFG00000010051 ENSCAFT00000015981 antisense intergenic 6524 convergent downstream +1 XLOC_090966 TCONS_00232956 ENSCAFG00000010839 ENSCAFT00000017231 antisense intergenic 174 divergent upstream +1 XLOC_090639 TCONS_00231610 ENSCAFG00000010198 ENSCAFT00000016185 antisense genic 0 overlapping exonic +1 XLOC_090606 TCONS_00231451 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231451 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_090817 TCONS_00232385 ENSCAFG00000011795 ENSCAFT00000018715 antisense genic 0 overlapping exonic +1 XLOC_090827 TCONS_00232403 ENSCAFG00000025115 ENSCAFT00000018582 antisense intergenic 8283 convergent downstream +1 XLOC_090620 TCONS_00231532 ENSCAFG00000009999 ENSCAFT00000015918 antisense genic 0 overlapping intronic +0 XLOC_090620 TCONS_00231532 ENSCAFG00000009970 ENSCAFT00000015870 antisense intergenic 517 divergent upstream +1 XLOC_090599 TCONS_00231403 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090892 TCONS_00232657 ENSCAFG00000020616 ENSCAFT00000032723 sense intergenic 4060 same_strand downstream +0 XLOC_090892 TCONS_00232657 ENSCAFG00000010051 ENSCAFT00000015981 antisense intergenic 6524 convergent downstream +1 XLOC_091055 TCONS_00233511 ENSCAFG00000012569 ENSCAFT00000019970 antisense genic 0 overlapping intronic +1 XLOC_090606 TCONS_00231447 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231447 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_090724 TCONS_00231951 ENSCAFG00000013641 ENSCAFT00000021629 antisense intergenic 2551 divergent upstream +1 XLOC_090966 TCONS_00232959 ENSCAFG00000010839 ENSCAFT00000017231 antisense intergenic 21521 divergent upstream +1 XLOC_090744 TCONS_00232062 ENSCAFG00000013336 ENSCAFT00000021179 sense intergenic 28636 same_strand upstream +1 XLOC_090599 TCONS_00231409 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090943 TCONS_00232881 ENSCAFG00000010624 ENSCAFT00000016924 antisense intergenic 22770 divergent upstream +1 XLOC_090974 TCONS_00232972 ENSCAFG00000010842 ENSCAFT00000017240 sense intergenic 85066 same_strand downstream +1 XLOC_090827 TCONS_00232399 ENSCAFG00000025115 ENSCAFT00000018582 antisense intergenic 8283 convergent downstream +1 XLOC_090641 TCONS_00231615 ENSCAFG00000010206 ENSCAFT00000016203 antisense genic 0 overlapping exonic +0 XLOC_090641 TCONS_00231615 ENSCAFG00000030013 ENSCAFT00000048475 sense intergenic 9159 same_strand upstream +1 XLOC_090878 TCONS_00232599 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090796 TCONS_00232278 ENSCAFG00000012557 ENSCAFT00000019943 antisense intergenic 1787 convergent downstream +0 XLOC_090796 TCONS_00232278 ENSCAFG00000023513 ENSCAFT00000036175 antisense intergenic 4482 divergent upstream +1 XLOC_090634 TCONS_00231598 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2410 divergent upstream +1 XLOC_090974 TCONS_00232975 ENSCAFG00000010842 ENSCAFT00000017240 sense intergenic 44952 same_strand downstream +1 XLOC_090620 TCONS_00231537 ENSCAFG00000009999 ENSCAFT00000015918 antisense genic 0 overlapping exonic +1 XLOC_090937 TCONS_00232867 ENSCAFG00000032530 ENSCAFT00000043356 sense intergenic 18647 same_strand upstream +1 XLOC_090606 TCONS_00231453 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231453 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2140 divergent upstream +1 XLOC_090690 TCONS_00231845 ENSCAFG00000021604 ENSCAFT00000033711 antisense genic 0 containing intronic +1 XLOC_090707 TCONS_00231908 ENSCAFG00000011325 ENSCAFT00000018005 antisense intergenic 6195 divergent upstream +0 XLOC_090707 TCONS_00231908 ENSCAFG00000031609 ENSCAFT00000047625 sense intergenic 9383 same_strand downstream +1 XLOC_090991 TCONS_00233052 ENSCAFG00000013637 ENSCAFT00000021622 antisense intergenic 27440 convergent downstream +1 XLOC_090849 TCONS_00232439 ENSCAFG00000030554 ENSCAFT00000018156 antisense intergenic 7303 divergent upstream +0 XLOC_090849 TCONS_00232439 ENSCAFG00000030554 ENSCAFT00000018170 antisense intergenic 8228 divergent upstream +1 XLOC_090620 TCONS_00231531 ENSCAFG00000009999 ENSCAFT00000015918 antisense genic 0 overlapping exonic +0 XLOC_090620 TCONS_00231531 ENSCAFG00000009970 ENSCAFT00000015870 antisense intergenic 516 divergent upstream +1 XLOC_091058 TCONS_00233515 ENSCAFG00000012566 ENSCAFT00000019952 sense intergenic 14689 same_strand downstream +1 XLOC_090599 TCONS_00231406 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090822 TCONS_00232391 ENSCAFG00000011747 ENSCAFT00000018659 sense intergenic 10055 same_strand downstream +1 XLOC_090606 TCONS_00231442 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 overlapping exonic +0 XLOC_090606 TCONS_00231442 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 625 divergent upstream +1 XLOC_091083 TCONS_00233601 ENSCAFG00000031934 ENSCAFT00000048683 sense intergenic 4985 same_strand upstream +1 XLOC_090634 TCONS_00231597 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2410 divergent upstream +1 XLOC_090729 TCONS_00231961 ENSCAFG00000013637 ENSCAFT00000021622 sense intergenic 95727 same_strand downstream +1 XLOC_090943 TCONS_00232880 ENSCAFG00000010624 ENSCAFT00000016924 antisense intergenic 25023 divergent upstream +1 XLOC_090743 TCONS_00232053 ENSCAFG00000013346 ENSCAFT00000021186 antisense genic 0 overlapping intronic +1 XLOC_091084 TCONS_00233602 ENSCAFG00000031934 ENSCAFT00000048683 sense intergenic 22216 same_strand upstream +0 XLOC_091084 TCONS_00233602 ENSCAFG00000011787 ENSCAFT00000018706 antisense intergenic 27625 divergent upstream +1 XLOC_090752 TCONS_00232088 ENSCAFG00000013259 ENSCAFT00000021052 antisense intergenic 3326 divergent upstream +1 XLOC_090662 TCONS_00231753 ENSCAFG00000010595 ENSCAFT00000044512 antisense intergenic 66882 convergent downstream +0 XLOC_090662 TCONS_00231753 ENSCAFG00000010595 ENSCAFT00000016835 antisense intergenic 69592 convergent downstream +1 XLOC_090599 TCONS_00231417 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 8242 same_strand downstream +1 XLOC_090726 TCONS_00231954 ENSCAFG00000013637 ENSCAFT00000021622 sense intergenic 60824 same_strand upstream +1 XLOC_090943 TCONS_00232879 ENSCAFG00000010624 ENSCAFT00000016924 antisense intergenic 25119 divergent upstream +1 XLOC_090961 TCONS_00232949 ENSCAFG00000010835 ENSCAFT00000017226 antisense intergenic 226 divergent upstream +1 XLOC_090994 TCONS_00233060 ENSCAFG00000013627 ENSCAFT00000021613 sense intergenic 10266 same_strand downstream +1 XLOC_090785 TCONS_00232222 ENSCAFG00000012621 ENSCAFT00000020056 antisense intergenic 6282 divergent upstream +1 XLOC_090725 TCONS_00231953 ENSCAFG00000013641 ENSCAFT00000021629 antisense intergenic 86041 divergent upstream +1 XLOC_090606 TCONS_00231444 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 overlapping exonic +0 XLOC_090606 TCONS_00231444 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 644 divergent upstream +1 XLOC_091082 TCONS_00233594 ENSCAFG00000031934 ENSCAFT00000048683 sense intergenic 1773 same_strand downstream +1 XLOC_090971 TCONS_00232967 ENSCAFG00000021604 ENSCAFT00000033711 sense intergenic 81822 same_strand upstream +1 XLOC_090827 TCONS_00232401 ENSCAFG00000025115 ENSCAFT00000018582 antisense intergenic 8283 convergent downstream +1 XLOC_090905 TCONS_00232716 ENSCAFG00000010180 ENSCAFT00000016167 sense intergenic 174 same_strand downstream +1 XLOC_090658 TCONS_00231722 ENSCAFG00000010525 ENSCAFT00000016748 antisense intergenic 9853 divergent upstream +1 XLOC_091060 TCONS_00233536 ENSCAFG00000023513 ENSCAFT00000036175 sense intergenic 4446 same_strand downstream +1 XLOC_090892 TCONS_00232662 ENSCAFG00000020616 ENSCAFT00000032723 sense genic 0 containing intronic +0 XLOC_090892 TCONS_00232662 ENSCAFG00000010051 ENSCAFT00000015981 antisense intergenic 6524 convergent downstream +1 XLOC_090878 TCONS_00232596 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_091093 TCONS_00233634 ENSCAFG00000011731 ENSCAFT00000018655 sense intergenic 40864 same_strand upstream +1 XLOC_090827 TCONS_00232398 ENSCAFG00000025115 ENSCAFT00000018582 antisense intergenic 8283 convergent downstream +1 XLOC_090998 TCONS_00233083 ENSCAFG00000013601 ENSCAFT00000021557 antisense genic 0 overlapping exonic +0 XLOC_090998 TCONS_00233083 ENSCAFG00000013540 ENSCAFT00000021486 sense intergenic 2616 same_strand downstream +0 XLOC_090998 TCONS_00233083 ENSCAFG00000013601 ENSCAFT00000021570 antisense intergenic 72 convergent downstream +1 XLOC_090618 TCONS_00231522 ENSCAFG00000009901 ENSCAFT00000049341 sense intergenic 10016 same_strand downstream +0 XLOC_090618 TCONS_00231522 ENSCAFG00000024609 ENSCAFT00000037921 sense intergenic 18666 same_strand upstream +0 XLOC_090618 TCONS_00231522 ENSCAFG00000009901 ENSCAFT00000046245 sense intergenic 10016 same_strand downstream +0 XLOC_090618 TCONS_00231522 ENSCAFG00000009901 ENSCAFT00000015800 sense intergenic 10019 same_strand downstream +1 XLOC_090633 TCONS_00231591 ENSCAFG00000010144 ENSCAFT00000016113 antisense intergenic 8145 divergent upstream +1 XLOC_090688 TCONS_00231841 ENSCAFG00000010839 ENSCAFT00000017231 sense intergenic 34682 same_strand downstream +1 XLOC_091032 TCONS_00233352 ENSCAFG00000013015 ENSCAFT00000020665 antisense intergenic 13332 divergent upstream +1 XLOC_090820 TCONS_00232389 ENSCAFG00000011785 ENSCAFT00000018701 antisense intergenic 4174 convergent downstream +1 XLOC_090620 TCONS_00231533 ENSCAFG00000009999 ENSCAFT00000015918 antisense genic 0 overlapping exonic +0 XLOC_090620 TCONS_00231533 ENSCAFG00000009970 ENSCAFT00000015870 antisense intergenic 657 divergent upstream +1 XLOC_090752 TCONS_00232089 ENSCAFG00000013259 ENSCAFT00000021052 antisense intergenic 3327 divergent upstream +1 XLOC_091024 TCONS_00233259 ENSCAFG00000013079 ENSCAFT00000020753 antisense genic 0 overlapping exonic +1 XLOC_091062 TCONS_00233543 ENSCAFG00000012557 ENSCAFT00000019943 sense intergenic 2148 same_strand downstream +0 XLOC_091062 TCONS_00233543 ENSCAFG00000023513 ENSCAFT00000036175 sense intergenic 5770 same_strand upstream +1 XLOC_090633 TCONS_00231590 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 4962 convergent downstream +0 XLOC_090633 TCONS_00231590 ENSCAFG00000010144 ENSCAFT00000016113 antisense intergenic 8138 divergent upstream +1 XLOC_090829 TCONS_00232405 ENSCAFG00000025115 ENSCAFT00000018582 antisense genic 0 overlapping exonic +0 XLOC_090829 TCONS_00232405 ENSCAFG00000025115 ENSCAFT00000018604 antisense intergenic 9767 convergent downstream +1 XLOC_090724 TCONS_00231952 ENSCAFG00000013641 ENSCAFT00000021629 antisense intergenic 3720 divergent upstream +1 XLOC_090758 TCONS_00232114 ENSCAFG00000013086 ENSCAFT00000020761 antisense genic 0 overlapping intronic +1 XLOC_090974 TCONS_00232973 ENSCAFG00000010842 ENSCAFT00000017240 sense intergenic 44952 same_strand downstream +1 XLOC_091068 TCONS_00233573 ENSCAFG00000032332 ENSCAFT00000047817 sense intergenic 1582 same_strand upstream +0 XLOC_091068 TCONS_00233573 ENSCAFG00000028933 ENSCAFT00000048290 antisense intergenic 5659 convergent downstream +0 XLOC_091068 TCONS_00233573 ENSCAFG00000029844 ENSCAFT00000047126 antisense intergenic 7029 divergent upstream +0 XLOC_091068 TCONS_00233573 ENSCAFG00000028933 ENSCAFT00000050050 antisense intergenic 5829 convergent downstream +1 XLOC_090599 TCONS_00231401 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090785 TCONS_00232224 ENSCAFG00000012621 ENSCAFT00000020056 antisense intergenic 7630 divergent upstream +1 XLOC_091093 TCONS_00233633 ENSCAFG00000011731 ENSCAFT00000018655 sense intergenic 40864 same_strand upstream +1 XLOC_090620 TCONS_00231538 ENSCAFG00000009999 ENSCAFT00000015918 antisense genic 0 overlapping exonic +1 XLOC_090634 TCONS_00231601 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 3157 divergent upstream +1 XLOC_090599 TCONS_00231407 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090825 TCONS_00232395 ENSCAFG00000011731 ENSCAFT00000018655 antisense intergenic 1539 divergent upstream +1 XLOC_090606 TCONS_00231449 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231449 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_091013 TCONS_00233148 ENSCAFG00000013259 ENSCAFT00000021052 sense intergenic 55618 same_strand downstream +1 XLOC_091011 TCONS_00233145 ENSCAFG00000013289 ENSCAFT00000044816 sense genic 0 overlapping intronic +0 XLOC_091011 TCONS_00233145 ENSCAFG00000013289 ENSCAFT00000021112 sense genic 0 nested intronic +1 XLOC_090822 TCONS_00232392 ENSCAFG00000011747 ENSCAFT00000018659 sense intergenic 10065 same_strand downstream +1 XLOC_090886 TCONS_00232636 ENSCAFG00000009999 ENSCAFT00000015918 sense intergenic 184 same_strand upstream +0 XLOC_090886 TCONS_00232636 ENSCAFG00000028060 ENSCAFT00000042343 antisense intergenic 1289 divergent upstream +0 XLOC_090886 TCONS_00232636 ENSCAFG00000010030 ENSCAFT00000015952 antisense intergenic 8175 divergent upstream +1 XLOC_090606 TCONS_00231446 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231446 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_090970 TCONS_00232965 ENSCAFG00000021604 ENSCAFT00000033711 sense intergenic 5524 same_strand upstream +1 XLOC_090608 TCONS_00231457 ENSCAFG00000028371 ENSCAFT00000042654 sense intergenic 15808 same_strand downstream +1 XLOC_090707 TCONS_00231907 ENSCAFG00000011325 ENSCAFT00000018005 antisense intergenic 6195 divergent upstream +0 XLOC_090707 TCONS_00231907 ENSCAFG00000031609 ENSCAFT00000047625 sense intergenic 9383 same_strand downstream +1 XLOC_090964 TCONS_00232952 ENSCAFG00000026633 ENSCAFT00000040916 sense intergenic 66675 same_strand upstream +1 XLOC_090742 TCONS_00232052 ENSCAFG00000013353 ENSCAFT00000037837 antisense intergenic 16793 divergent upstream +0 XLOC_090742 TCONS_00232052 ENSCAFG00000013353 ENSCAFT00000021201 antisense intergenic 16793 divergent upstream +1 XLOC_090685 TCONS_00231831 ENSCAFG00000026633 ENSCAFT00000040916 antisense intergenic 90567 divergent upstream +1 XLOC_090878 TCONS_00232601 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090634 TCONS_00231596 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2409 divergent upstream +1 XLOC_090633 TCONS_00231592 ENSCAFG00000010144 ENSCAFT00000016113 antisense intergenic 8606 divergent upstream +1 XLOC_090747 TCONS_00232078 ENSCAFG00000013317 ENSCAFT00000021142 sense intergenic 1952 same_strand upstream +1 XLOC_090720 TCONS_00231945 ENSCAFG00000026373 ENSCAFT00000040656 sense intergenic 66670 same_strand upstream +1 XLOC_090943 TCONS_00232878 ENSCAFG00000010624 ENSCAFT00000016924 antisense intergenic 25650 divergent upstream +1 XLOC_090777 TCONS_00232178 ENSCAFG00000012732 ENSCAFT00000020175 antisense intergenic 2331 divergent upstream +0 XLOC_090777 TCONS_00232178 ENSCAFG00000012733 ENSCAFT00000020181 sense intergenic 5163 same_strand downstream +0 XLOC_090777 TCONS_00232178 ENSCAFG00000012722 ENSCAFT00000020174 sense intergenic 3019 same_strand upstream +1 XLOC_090829 TCONS_00232406 ENSCAFG00000025115 ENSCAFT00000018582 antisense genic 0 overlapping exonic +0 XLOC_090829 TCONS_00232406 ENSCAFG00000025115 ENSCAFT00000018604 antisense intergenic 9767 convergent downstream +1 XLOC_090744 TCONS_00232063 ENSCAFG00000013336 ENSCAFT00000021179 sense intergenic 35060 same_strand upstream +1 XLOC_090620 TCONS_00231539 ENSCAFG00000009999 ENSCAFT00000015918 antisense genic 0 overlapping intronic +1 XLOC_090746 TCONS_00232077 ENSCAFG00000013336 ENSCAFT00000021179 sense intergenic 6186 same_strand downstream +1 XLOC_090652 TCONS_00231715 ENSCAFG00000021533 ENSCAFT00000033640 antisense genic 0 containing intronic +1 XLOC_090802 TCONS_00232321 ENSCAFG00000012174 ENSCAFT00000019707 antisense intergenic 692 divergent upstream +0 XLOC_090802 TCONS_00232321 ENSCAFG00000032332 ENSCAFT00000047817 antisense intergenic 8255 convergent downstream +0 XLOC_090802 TCONS_00232321 ENSCAFG00000028933 ENSCAFT00000048290 sense intergenic 3788 same_strand upstream +0 XLOC_090802 TCONS_00232321 ENSCAFG00000028933 ENSCAFT00000050050 sense intergenic 779 same_strand upstream +1 XLOC_090720 TCONS_00231946 ENSCAFG00000026373 ENSCAFT00000040656 sense intergenic 66670 same_strand upstream +1 XLOC_090925 TCONS_00232810 ENSCAFG00000010525 ENSCAFT00000016748 sense intergenic 20055 same_strand downstream +1 XLOC_090891 TCONS_00232655 ENSCAFG00000010051 ENSCAFT00000015981 antisense intergenic 855 convergent downstream +0 XLOC_090891 TCONS_00232655 ENSCAFG00000020616 ENSCAFT00000032723 sense intergenic 8438 same_strand downstream +1 XLOC_090802 TCONS_00232319 ENSCAFG00000012174 ENSCAFT00000019707 antisense intergenic 641 divergent upstream +0 XLOC_090802 TCONS_00232319 ENSCAFG00000032332 ENSCAFT00000047817 antisense intergenic 8255 convergent downstream +0 XLOC_090802 TCONS_00232319 ENSCAFG00000028933 ENSCAFT00000048290 sense intergenic 3788 same_strand upstream +0 XLOC_090802 TCONS_00232319 ENSCAFG00000028933 ENSCAFT00000050050 sense intergenic 779 same_strand upstream +1 XLOC_090634 TCONS_00231595 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2409 divergent upstream +1 XLOC_090606 TCONS_00231452 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231452 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_090862 TCONS_00232466 ENSCAFG00000031149 ENSCAFT00000047341 antisense genic 0 overlapping exonic +1 XLOC_090606 TCONS_00231454 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231454 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2210 divergent upstream +1 XLOC_090700 TCONS_00231870 ENSCAFG00000011125 ENSCAFT00000017715 antisense genic 0 overlapping exonic +1 XLOC_090694 TCONS_00231853 ENSCAFG00000010842 ENSCAFT00000017240 antisense genic 0 overlapping intronic +1 XLOC_090953 TCONS_00232919 ENSCAFG00000025753 ENSCAFT00000040036 antisense intergenic 17015 divergent upstream +1 XLOC_090801 TCONS_00232317 ENSCAFG00000012174 ENSCAFT00000019707 antisense genic 0 nested exonic +1 XLOC_090964 TCONS_00232953 ENSCAFG00000026633 ENSCAFT00000040916 sense intergenic 66675 same_strand upstream +1 XLOC_090849 TCONS_00232434 ENSCAFG00000030554 ENSCAFT00000018156 antisense intergenic 6167 divergent upstream +0 XLOC_090849 TCONS_00232434 ENSCAFG00000030554 ENSCAFT00000018170 antisense intergenic 7092 divergent upstream +1 XLOC_090752 TCONS_00232086 ENSCAFG00000013259 ENSCAFT00000021052 antisense intergenic 3325 divergent upstream +1 XLOC_090639 TCONS_00231608 ENSCAFG00000010198 ENSCAFT00000016185 antisense genic 0 overlapping exonic +1 XLOC_090634 TCONS_00231600 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2414 divergent upstream +1 XLOC_090861 TCONS_00232465 ENSCAFG00000009564 ENSCAFT00000015202 antisense genic 0 overlapping exonic +1 XLOC_090947 TCONS_00232886 ENSCAFG00000029859 ENSCAFT00000048330 sense genic 0 containing intronic +0 XLOC_090947 TCONS_00232886 ENSCAFG00000002103 ENSCAFT00000013152 antisense genic 0 containing intronic +0 XLOC_090947 TCONS_00232886 ENSCAFG00000028763 ENSCAFT00000050209 sense genic 0 containing intronic +1 XLOC_091073 TCONS_00233579 ENSCAFG00000011857 ENSCAFT00000018829 antisense genic 0 overlapping exonic +0 XLOC_091073 TCONS_00233579 ENSCAFG00000011835 ENSCAFT00000018806 antisense intergenic 6095 divergent upstream +1 XLOC_090727 TCONS_00231957 ENSCAFG00000013637 ENSCAFT00000021622 sense genic 0 containing intronic +1 XLOC_090915 TCONS_00232764 ENSCAFG00000029799 ENSCAFT00000046901 antisense genic 0 overlapping intronic +0 XLOC_090915 TCONS_00232764 ENSCAFG00000010239 ENSCAFT00000016260 antisense intergenic 1870 convergent downstream +1 XLOC_090732 TCONS_00231966 ENSCAFG00000013620 ENSCAFT00000021590 antisense intergenic 1483 divergent upstream +0 XLOC_090732 TCONS_00231966 ENSCAFG00000013601 ENSCAFT00000021557 sense intergenic 9590 same_strand upstream +0 XLOC_090732 TCONS_00231966 ENSCAFG00000013601 ENSCAFT00000021570 sense intergenic 9792 same_strand upstream +1 XLOC_090639 TCONS_00231609 ENSCAFG00000010198 ENSCAFT00000016185 antisense intergenic 766 convergent downstream +1 XLOC_090634 TCONS_00231599 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2410 divergent upstream +1 XLOC_091032 TCONS_00233350 ENSCAFG00000013015 ENSCAFT00000020665 antisense intergenic 18981 divergent upstream +1 XLOC_090937 TCONS_00232869 ENSCAFG00000032530 ENSCAFT00000043356 sense intergenic 85972 same_strand upstream +1 XLOC_090878 TCONS_00232597 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090694 TCONS_00231852 ENSCAFG00000010842 ENSCAFT00000017240 antisense genic 0 overlapping exonic +1 XLOC_090599 TCONS_00231405 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090689 TCONS_00231844 ENSCAFG00000010839 ENSCAFT00000017231 sense intergenic 59856 same_strand downstream +1 XLOC_090992 TCONS_00233056 ENSCAFG00000013637 ENSCAFT00000021622 antisense intergenic 40976 convergent downstream +1 XLOC_090688 TCONS_00231842 ENSCAFG00000010839 ENSCAFT00000017231 sense intergenic 51002 same_strand downstream +1 XLOC_090664 TCONS_00231756 ENSCAFG00000010603 ENSCAFT00000016853 antisense intergenic 77031 divergent upstream +1 XLOC_091071 TCONS_00233577 ENSCAFG00000011865 ENSCAFT00000018843 antisense genic 0 overlapping exonic +0 XLOC_091071 TCONS_00233577 ENSCAFG00000029844 ENSCAFT00000047126 antisense intergenic 7805 convergent downstream +1 XLOC_090966 TCONS_00232955 ENSCAFG00000010839 ENSCAFT00000017231 antisense intergenic 174 divergent upstream +1 XLOC_090827 TCONS_00232402 ENSCAFG00000025115 ENSCAFT00000018582 antisense intergenic 8283 convergent downstream +1 XLOC_090743 TCONS_00232056 ENSCAFG00000013346 ENSCAFT00000021186 antisense intergenic 377 divergent upstream +1 XLOC_090675 TCONS_00231788 ENSCAFG00000010731 ENSCAFT00000017072 antisense genic 0 nested exonic +1 XLOC_090743 TCONS_00232059 ENSCAFG00000013346 ENSCAFT00000021186 antisense intergenic 377 divergent upstream +1 XLOC_091032 TCONS_00233351 ENSCAFG00000013015 ENSCAFT00000020665 antisense intergenic 15339 divergent upstream +1 XLOC_090599 TCONS_00231411 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090849 TCONS_00232435 ENSCAFG00000030554 ENSCAFT00000018156 antisense intergenic 6167 divergent upstream +0 XLOC_090849 TCONS_00232435 ENSCAFG00000030554 ENSCAFT00000018170 antisense intergenic 7092 divergent upstream +1 XLOC_091058 TCONS_00233514 ENSCAFG00000012566 ENSCAFT00000019952 sense intergenic 15062 same_strand downstream +1 XLOC_090634 TCONS_00231593 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 2408 divergent upstream +1 XLOC_090802 TCONS_00232322 ENSCAFG00000028933 ENSCAFT00000050050 sense intergenic 779 same_strand upstream +0 XLOC_090802 TCONS_00232322 ENSCAFG00000012174 ENSCAFT00000019707 antisense intergenic 3732 divergent upstream +0 XLOC_090802 TCONS_00232322 ENSCAFG00000032332 ENSCAFT00000047817 antisense intergenic 8255 convergent downstream +0 XLOC_090802 TCONS_00232322 ENSCAFG00000028933 ENSCAFT00000048290 sense intergenic 3788 same_strand upstream +1 XLOC_090968 TCONS_00232961 ENSCAFG00000010839 ENSCAFT00000017231 antisense intergenic 11872 convergent downstream +1 XLOC_090720 TCONS_00231943 ENSCAFG00000026373 ENSCAFT00000040656 sense intergenic 66670 same_strand upstream +1 XLOC_090795 TCONS_00232276 ENSCAFG00000012566 ENSCAFT00000019952 antisense intergenic 24437 convergent downstream +0 XLOC_090795 TCONS_00232276 ENSCAFG00000023704 ENSCAFT00000036617 sense intergenic 26617 same_strand downstream +1 XLOC_090892 TCONS_00232658 ENSCAFG00000020616 ENSCAFT00000032723 sense intergenic 3555 same_strand downstream +0 XLOC_090892 TCONS_00232658 ENSCAFG00000010051 ENSCAFT00000015981 antisense intergenic 6524 convergent downstream +1 XLOC_090878 TCONS_00232604 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090720 TCONS_00231947 ENSCAFG00000026373 ENSCAFT00000040656 sense intergenic 66670 same_strand upstream +1 XLOC_091060 TCONS_00233540 ENSCAFG00000023513 ENSCAFT00000036175 sense intergenic 369 same_strand downstream +1 XLOC_090966 TCONS_00232960 ENSCAFG00000010839 ENSCAFT00000017231 antisense intergenic 1254 divergent upstream +1 XLOC_090606 TCONS_00231445 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231445 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_091067 TCONS_00233569 ENSCAFG00000028933 ENSCAFT00000050050 antisense intergenic 3304 divergent upstream +0 XLOC_091067 TCONS_00233569 ENSCAFG00000012174 ENSCAFT00000019707 sense intergenic 7282 same_strand upstream +0 XLOC_091067 TCONS_00233569 ENSCAFG00000028933 ENSCAFT00000048290 antisense intergenic 6313 divergent upstream +1 XLOC_090827 TCONS_00232400 ENSCAFG00000025115 ENSCAFT00000018582 antisense intergenic 8283 convergent downstream +1 XLOC_090639 TCONS_00231607 ENSCAFG00000010198 ENSCAFT00000016185 antisense genic 0 overlapping exonic +1 XLOC_090633 TCONS_00231588 ENSCAFG00000010144 ENSCAFT00000016113 antisense intergenic 8054 divergent upstream +1 XLOC_090878 TCONS_00232603 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_091013 TCONS_00233149 ENSCAFG00000013259 ENSCAFT00000021052 sense intergenic 55054 same_strand downstream +1 XLOC_090785 TCONS_00232221 ENSCAFG00000012621 ENSCAFT00000020056 antisense intergenic 5831 divergent upstream +1 XLOC_090953 TCONS_00232920 ENSCAFG00000025753 ENSCAFT00000040036 antisense genic 0 containing intronic +1 XLOC_090966 TCONS_00232957 ENSCAFG00000010839 ENSCAFT00000017231 antisense intergenic 174 divergent upstream +1 XLOC_090796 TCONS_00232279 ENSCAFG00000012557 ENSCAFT00000019943 antisense intergenic 1787 convergent downstream +0 XLOC_090796 TCONS_00232279 ENSCAFG00000023513 ENSCAFT00000036175 antisense intergenic 7343 divergent upstream +1 XLOC_090992 TCONS_00233055 ENSCAFG00000013637 ENSCAFT00000021622 antisense intergenic 40976 convergent downstream +1 XLOC_090737 TCONS_00232010 ENSCAFG00000013502 ENSCAFT00000021419 antisense genic 0 nested exonic +1 XLOC_091073 TCONS_00233580 ENSCAFG00000011857 ENSCAFT00000018829 antisense genic 0 overlapping exonic +0 XLOC_091073 TCONS_00233580 ENSCAFG00000011835 ENSCAFT00000018806 antisense intergenic 6095 divergent upstream +1 XLOC_091111 TCONS_00233707 ENSCAFG00000030554 ENSCAFT00000018156 sense intergenic 3652 same_strand upstream +0 XLOC_091111 TCONS_00233707 ENSCAFG00000030554 ENSCAFT00000018170 sense intergenic 4577 same_strand upstream +1 XLOC_090937 TCONS_00232868 ENSCAFG00000032530 ENSCAFT00000043356 sense intergenic 23510 same_strand upstream +1 XLOC_090675 TCONS_00231790 ENSCAFG00000010731 ENSCAFT00000017072 antisense genic 0 nested exonic +1 XLOC_090989 TCONS_00233037 ENSCAFG00000011340 ENSCAFT00000018023 antisense intergenic 5988 convergent downstream +1 XLOC_090947 TCONS_00232887 ENSCAFG00000029859 ENSCAFT00000048330 sense genic 0 containing intronic +0 XLOC_090947 TCONS_00232887 ENSCAFG00000028763 ENSCAFT00000050209 sense genic 0 containing intronic +0 XLOC_090947 TCONS_00232887 ENSCAFG00000002103 ENSCAFT00000013152 antisense genic 0 containing intronic +1 XLOC_090991 TCONS_00233053 ENSCAFG00000013637 ENSCAFT00000021622 antisense intergenic 27440 convergent downstream +1 XLOC_090628 TCONS_00231553 ENSCAFG00000025208 ENSCAFT00000039078 antisense intergenic 1622 divergent upstream +0 XLOC_090628 TCONS_00231553 ENSCAFG00000010051 ENSCAFT00000015981 sense intergenic 4505 same_strand upstream +1 XLOC_090991 TCONS_00233054 ENSCAFG00000013637 ENSCAFT00000021622 antisense intergenic 27440 convergent downstream +1 XLOC_090599 TCONS_00231404 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090599 TCONS_00231408 ENSCAFG00000009602 ENSCAFT00000049169 sense intergenic 7295 same_strand downstream +1 XLOC_090627 TCONS_00231552 ENSCAFG00000010038 ENSCAFT00000015965 antisense intergenic 1824 convergent downstream +1 XLOC_090974 TCONS_00232974 ENSCAFG00000010842 ENSCAFT00000017240 sense intergenic 44952 same_strand downstream +1 XLOC_090878 TCONS_00232598 ENSCAFG00000009675 ENSCAFT00000015370 sense intergenic 19181 same_strand upstream +1 XLOC_090802 TCONS_00232320 ENSCAFG00000012174 ENSCAFT00000019707 antisense intergenic 692 divergent upstream +0 XLOC_090802 TCONS_00232320 ENSCAFG00000028933 ENSCAFT00000048290 sense intergenic 3788 same_strand upstream +0 XLOC_090802 TCONS_00232320 ENSCAFG00000032332 ENSCAFT00000047817 antisense intergenic 8255 convergent downstream +0 XLOC_090802 TCONS_00232320 ENSCAFG00000028933 ENSCAFT00000050050 sense intergenic 779 same_strand upstream +1 XLOC_090675 TCONS_00231789 ENSCAFG00000010731 ENSCAFT00000017072 antisense genic 0 nested exonic +1 XLOC_090652 TCONS_00231714 ENSCAFG00000021533 ENSCAFT00000033640 antisense genic 0 containing intronic +1 XLOC_090690 TCONS_00231846 ENSCAFG00000021604 ENSCAFT00000033711 antisense genic 0 containing intronic +1 XLOC_090606 TCONS_00231448 ENSCAFG00000009623 ENSCAFT00000015286 antisense genic 0 nested exonic +0 XLOC_090606 TCONS_00231448 ENSCAFG00000009619 ENSCAFT00000015284 antisense intergenic 2139 divergent upstream +1 XLOC_090700 TCONS_00231871 ENSCAFG00000011125 ENSCAFT00000017715 antisense genic 0 overlapping exonic +1 XLOC_090707 TCONS_00231909 ENSCAFG00000011325 ENSCAFT00000018005 antisense intergenic 6195 divergent upstream +0 XLOC_090707 TCONS_00231909 ENSCAFG00000031609 ENSCAFT00000047625 sense intergenic 9383 same_strand downstream +1 XLOC_091056 TCONS_00233512 ENSCAFG00000023704 ENSCAFT00000036617 antisense genic 0 overlapping exonic +1 XLOC_090634 TCONS_00231602 ENSCAFG00000010148 ENSCAFT00000016118 antisense intergenic 9337 divergent upstream +1 XLOC_091009 TCONS_00233127 ENSCAFG00000013336 ENSCAFT00000021179 antisense intergenic 6186 convergent downstream +1 XLOC_091058 TCONS_00233516 ENSCAFG00000012566 ENSCAFT00000019952 sense intergenic 14665 same_strand downstream