filter_tabular: macros.xml annotate

annotate macros.xml @ 8:59278960a2e7 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541"

author	iuc
date	Thu, 23 Jan 2020 07:36:21 -0500
parents	5c1b09e05757
children	69b08fc9557c

rev	line source
0 6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	1 <macros>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	2 <token name="@LINEFILTERS@">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	3 <![CDATA[
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	4 ## set linefilters to the
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	5 #set $input_filters = []
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	6 #for $fi in $linefilters:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	7 #if $fi.filter.filter_type == 'skip':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	8 #set $skip_lines = None
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	9 #if str($fi.filter.skip_lines) != '':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	10 #set $skip_lines = int($fi.filter.skip_lines)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	11 #elif $tbl.table.metadata.comment_lines and $tbl.table.metadata.comment_lines > 0:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	12 #set $skip_lines = int($tbl.table.metadata.comment_lines)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	13 #end if
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	14 #if $skip_lines is not None:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	15 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	16 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	17 #set $filter_dict['count'] = $skip_lines
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	18 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	19 #end if
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	20 #elif $fi.filter.filter_type == 'comment':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	21 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	22 #set $filter_dict['filter'] = 'regex'
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	23 #set $filter_dict['pattern'] = '^(%s).*$' % '\|'.join([chr(int(x)).replace('\|','[\|]') for x in (str($fi.filter.comment_char)).split(',')])
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	24 #set $filter_dict['action'] = 'exclude_match'
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	25 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	26 #elif $fi.filter.filter_type == 'regex':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	27 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	28 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	29 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	30 #set $filter_dict['action'] = str($fi.filter.regex_action)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	31 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	32 #elif $fi.filter.filter_type == 'select_columns':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	33 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	34 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	35 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')]
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	36 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	37 #elif $fi.filter.filter_type == 'replace':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	38 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	39 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	40 #set $filter_dict['column'] = int(str($fi.filter.column).replace('c',''))
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	41 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	42 #set $filter_dict['replace'] = str($fi.filter.regex_replace)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	43 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	44 #elif str($fi.filter.filter_type).endswith('pend_line_num'):
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	45 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	46 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	47 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	48 #elif str($fi.filter.filter_type).endswith('pend_text'):
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	49 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	50 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	51 #set $filter_dict['column_text'] = str($fi.filter.column_text)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	52 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	53 #elif $fi.filter.filter_type == 'normalize':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	54 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	55 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	56 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')]
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	57 #set $filter_dict['separator'] = str($fi.filter.separator)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	58 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	59 #end if
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	60 #end for
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	61 ]]>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	62 </token>
1 cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	63 <token name="@RESULT_HEADER@">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	64 <![CDATA[
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	65 #if $query_result.header == 'yes':
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	66 #if $query_result.header_prefix:
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	67 #set $header_prefix = chr(int(str($query_result.header_prefix)))
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	68 --comment_char='$header_prefix'
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	69 #end if
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	70 #else
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	71 --no_header
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	72 #end if
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	73 ]]>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	74 </token>
8 59278960a2e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541" iuc parents: 6 diff changeset	75 <xml name="requirements">
59278960a2e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541" iuc parents: 6 diff changeset	76 <requirements>
59278960a2e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541" iuc parents: 6 diff changeset	77 <requirement type="package" version="3.7">python</requirement>
59278960a2e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541" iuc parents: 6 diff changeset	78 </requirements>
59278960a2e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541" iuc parents: 6 diff changeset	79 </xml>
1 cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	80 <xml name="comment_char_options">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	81 <option value="62">></option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	82 <option value="64">@</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	83 <option value="43">+</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	84 <option value="60"><</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	85 <option value="42">*</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	86 <option value="45">-</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	87 <option value="61">=</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	88 <option value="124">\|</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	89 <option value="63">?</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	90 <option value="36">$</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	91 <option value="46">.</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	92 <option value="58">:</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	93 <option value="38">&</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	94 <option value="37">%</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	95 <option value="94">^</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	96 <option value="35" selected="true">#</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	97 <option value="33">!</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	98 </xml>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	99 <xml name="result_results_header_line">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	100 <conditional name="query_result">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	101 <param name="header" type="select" label="include query result column headers">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	102 <option value="yes">Yes</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	103 <option value="no">No</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	104 </param>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	105 <when value="yes">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	106 <param name="header_prefix" type="select" optional="true" label="Prefix character for column_header line">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	107 <option value="">no comment character prefix</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	108 <expand macro="comment_char_options" />
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	109 </param>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	110 </when>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	111 <when value="no"/>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	112 </conditional>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	113 </xml>
4 fe7be5634ab3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40 iuc parents: 1 diff changeset	114 <xml name="sql_query_input">
fe7be5634ab3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40 iuc parents: 1 diff changeset	115 <param name="sqlquery" type="text" area="true" size="20x80" value="" optional="true" label="SQL Query to generate tabular output">
fe7be5634ab3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40 iuc parents: 1 diff changeset	116 <help>By default: tables are named: t1,t2,...,tn and columns in each table: c1,c2,...,cn</help>
fe7be5634ab3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40 iuc parents: 1 diff changeset	117 <sanitizer sanitize="False"/>
fe7be5634ab3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40 iuc parents: 1 diff changeset	118 <validator type="regex" message="">^(?ims)\sselect\s+.\s+from\s+.*$</validator>
fe7be5634ab3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40 iuc parents: 1 diff changeset	119 </param>
fe7be5634ab3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40 iuc parents: 1 diff changeset	120 </xml>
0 6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	121 <xml name="macro_line_filters">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	122 <repeat name="linefilters" title="Filter Tabular Input Lines">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	123 <conditional name="filter">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	124 <param name="filter_type" type="select" label="Filter By">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	125 <option value="skip">skip leading lines</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	126 <option value="comment">comment char</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	127 <option value="regex">by regex expression matching</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	128 <option value="select_columns">select columns</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	129 <option value="replace">regex replace value in column</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	130 <option value="prepend_line_num">prepend a line number column</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	131 <option value="append_line_num">append a line number column</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	132 <option value="prepend_text">prepend a column with the given text</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	133 <option value="append_text">append a column with the given text</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	134 <option value="normalize">normalize list columns, replicates row for each item in list</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	135 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	136 <when value="skip">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	137 <param name="skip_lines" type="integer" value="" min="0" optional="true" label="Skip lines"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	138 help="Leave blank to use the comment lines metadata for this dataset" />
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	139 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	140 <when value="comment">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	141 <param name="comment_char" type="select" display="checkboxes" multiple="True" label="Ignore lines beginning with these characters" help="lines beginning with these are skipped">
1 cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	142 <expand macro="comment_char_options" />
0 6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	143 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	144 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	145 <when value="prepend_line_num"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	146 <when value="append_line_num"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	147 <when value="prepend_text">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	148 <param name="column_text" type="text" value="" label="text for column">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	149 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	150 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	151 <when value="append_text">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	152 <param name="column_text" type="text" value="" label="text for column">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	153 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	154 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	155 <when value="regex">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	156 <param name="regex_pattern" type="text" value="" label="regex pattern">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	157 <sanitizer sanitize="False"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	158 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	159 <param name="regex_action" type="select" label="action for regex match">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	160 <option value="exclude_match">exclude line on pattern match</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	161 <option value="include_match">include line on pattern match</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	162 <option value="exclude_find">exclude line if pattern found</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	163 <option value="include_find">include line if pattern found</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	164 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	165 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	166 <when value="select_columns">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	167 <param name="columns" type="text" value="" label="enter column numbers to keep"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	168 help="example: 1,4,2 or c1,c4,c2(selects the first,fourth, and second columns)">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	169 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d)(,c?[1-9]\d)*$</validator>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	170 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	171 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	172 <when value="replace">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	173 <param name="column" type="text" value="" label="enter column number to replace"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	174 help="example: 1 or c1 (selects the first column)">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	175 <validator type="regex" message="Column ordinal position separated by commas">^(c?[1-9]\d*)$</validator>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	176 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	177 <param name="regex_pattern" type="text" value="" label="regex pattern">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	178 <sanitizer sanitize="False"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	179 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	180 <param name="regex_replace" type="text" value="" label="replacement expression">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	181 <sanitizer sanitize="False"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	182 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	183 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	184 <when value="normalize">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	185 <param name="columns" type="text" value="" label="enter column numbers to normalize">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	186 <help><![CDATA[
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	187 example: 2,4 or c2,c4 (selects the second, and fourth columns)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	188 If multiple columns are selected, they should have the same length and separator on each line
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	189 ]]></help>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	190 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d)(,c?[1-9]\d)*$</validator>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	191 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	192 <param name="separator" type="text" value="," label="List item delimiter in column">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	193 <sanitizer sanitize="False"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	194 <validator type="regex" message="Anything but TAB or Newline">^[^\t\n\r\f\v]+$</validator>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	195 </param>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	196 </when>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	197 </conditional>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	198 </repeat>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	199 </xml>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	200
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	201 <token name="@LINEFILTERS_HELP@">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	202 <![CDATA[
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	203 Input Line Filters
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	204
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	205 As a tabular file is being read, line filters may be applied.
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	206
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	207 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	208
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	209 - skip leading lines skip the first number of lines
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	210 - comment char omit any lines that start with the specified comment character
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	211 - by regex expression matching include/exclude lines the match the regex expression
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	212 - select columns choose to include only selected columns in the order specified
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	213 - regex replace value in column replace a field in a column using a regex substitution (good for date reformatting)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	214 - prepend a line number column each line has the ordinal value of the line read by this filter as the first column
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	215 - append a line number column each line has the ordinal value of the line read by this filter as the last column
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	216 - prepend a text column each line has the text string as the first column
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	217 - append a text column each line has the text string as the last column
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	218 - normalize list columns replicates the line for each item in the specified list columns
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	219 ]]>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	220 </token>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	221
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	222 <token name="@LINEFILTERS_HELP_EXAMPLE@">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	223 <![CDATA[
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	224 Line Filtering Example
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	225 (Six filters are applied as the following file is read)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	226
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	227 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	228
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	229 Input Tabular File:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	230
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	231 #People with pets
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	232 Pets FirstName LastName DOB PetNames PetType
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	233 2 Paula Brown 24/05/78 Rex,Fluff dog,cat
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	234 1 Steven Jones 04/04/74 Allie cat
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	235 0 Jane Doe 24/05/78
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	236 1 James Smith 20/10/80 Spot
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	237
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	238
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	239 Filter 1 - append a line number column:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	240
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	241 #People with pets 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	242 Pets FirstName LastName DOB PetNames PetType 2
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	243 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	244 1 Steven Jones 04/04/74 Allie cat 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	245 0 Jane Doe 24/05/78 5
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	246 1 James Smith 20/10/80 Spot 6
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	247
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	248 Filter 2 - by regex expression matching [include]: '^\d+' (include lines that start with a number)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	249
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	250 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	251 1 Steven Jones 04/04/74 Allie cat 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	252 0 Jane Doe 24/05/78 5
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	253 1 James Smith 20/10/80 Spot 6
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	254
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	255 Filter 3 - append a line number column:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	256
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	257 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	258 1 Steven Jones 04/04/74 Allie cat 4 2
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	259 0 Jane Doe 24/05/78 5 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	260 1 James Smith 20/10/80 Spot 6 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	261
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	262 Filter 4 - regex replace value in column[4]: '(\d+)/(\d+)/(\d+)' '19\3-\2-\1' (convert dates to sqlite format)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	263
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	264 2 Paula Brown 1978-05-24 Rex,Fluff dog,cat 3 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	265 1 Steven Jones 1974-04-04 Allie cat 4 2
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	266 0 Jane Doe 1978-05-24 5 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	267 1 James Smith 1980-10-20 Spot 6 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	268
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	269 Filter 5 - normalize list columns[5,6]:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	270
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	271 2 Paula Brown 1978-05-24 Rex dog 3 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	272 2 Paula Brown 1978-05-24 Fluff cat 3 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	273 1 Steven Jones 1974-04-04 Allie cat 4 2
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	274 0 Jane Doe 1978-05-24 5 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	275 1 James Smith 1980-10-20 Spot 6 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	276
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	277 Filter 6 - append a line number column:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	278
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	279 2 Paula Brown 1978-05-24 Rex dog 3 1 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	280 2 Paula Brown 1978-05-24 Fluff cat 3 1 2
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	281 1 Steven Jones 1974-04-04 Allie cat 4 2 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	282 0 Jane Doe 1978-05-24 5 3 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	283 1 James Smith 1980-10-20 Spot 6 4 5
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	284
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	285 ]]>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	286 </token>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	287
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	288 <token name="@QUERY_HELP@">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	289 <![CDATA[
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	290
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	291 For help in using SQLite_ see: http://www.sqlite.org/docs.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	292
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	293 NOTE: input for SQLite dates input field must be in the format: YYYY-MM-DD for example: 2015-09-30
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	294
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	295 See: http://www.sqlite.org/lang_datefunc.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	296
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	297 Example
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	298
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	299 Given 2 tabular datasets: customers and sales
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	300
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	301 Dataset customers
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	302
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	303 Table name: "customers"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	304
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	305 Column names: "CustomerID,FirstName,LastName,Email,DOB,Phone"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	306
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	307 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	308 #CustomerID FirstName LastName Email DOB Phone
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	309 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	310 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	311 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	312 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	313 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	314 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	315
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	316 Dataset sales
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	317
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	318 Table name: "sales"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	319
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	320 Column names: "CustomerID,Date,SaleAmount"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	321
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	322 ============= ============ ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	323 #CustomerID Date SaleAmount
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	324 ============= ============ ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	325 2 2004-05-06 100.22
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	326 1 2004-05-07 99.95
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	327 3 2004-05-07 122.95
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	328 3 2004-05-13 100.00
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	329 4 2004-05-22 555.55
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	330 ============= ============ ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	331
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	332 The query
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	333
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	334 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	335
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	336 SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	337 FROM customers join sales on customers.CustomerID = sales.CustomerID
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	338 GROUP BY customers.CustomerID ORDER BY TotalSales DESC;
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	339
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	340 Produces this tabular output:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	341
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	342 ========== ======== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	343 #FirstName LastName TotalSales
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	344 ========== ======== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	345 James Smith 555.55
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	346 Paula Brown 222.95
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	347 Steven Goldfish 100.22
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	348 John Smith 99.95
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	349 ========== ======== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	350
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	351
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	352 If the optional Table name and Column names inputs are not used, the query would be:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	353
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	354 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	355
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	356 SELECT t1.c2 as "FirstName", t1.c3 as "LastName", sum(t2.c3) as "TotalSales"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	357 FROM t1 join t2 on t1.c1 = t2.c1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	358 GROUP BY t1.c1 ORDER BY TotalSales DESC;
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	359
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	360 You can selectively name columns, e.g. on the customers input you could just name columns 2,3, and 5:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	361
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	362 Column names: ,FirstName,LastName,,BirthDate
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	363
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	364 Results in the following data base table
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	365
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	366 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	367 #c1 FirstName LastName c4 BirthDate c6
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	368 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	369 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	370 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	371 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	372 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	373 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	374
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	375
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	376 Regular_expression_ functions are included for:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	377
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	378 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	379
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	380 matching: re_match('pattern',column)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	381
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	382 SELECT t1.FirstName, t1.LastName
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	383 FROM t1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	384 WHERE re_match('^.*\.(net\|org)$',c4)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	385
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	386 Results:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	387
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	388 =========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	389 #FirstName LastName
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	390 =========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	391 Steven Goldfish
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	392 Paula Brown
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	393 =========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	394
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	395
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	396 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	397
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	398 searching: re_search('pattern',column)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	399 substituting: re_sub('pattern','replacement,column)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	400
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	401 SELECT t1.FirstName, t1.LastName, re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	402 FROM t1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	403 WHERE re_search('[hp]er',c4)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	404
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	405 Results:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	406
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	407
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	408 =========== ========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	409 #FirstName LastName DOB
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	410 =========== ========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	411 Steven Goldfish 04/04/74
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	412 Paula Brown 24/05/78
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	413 James Smith 20/10/80
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	414 =========== ========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	415
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	416 .. _Regular_expression: https://docs.python.org/release/2.7/library/re.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	417 .. _SQLite: http://www.sqlite.org/index.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	418 .. _SQLite_functions: http://www.sqlite.org/docs.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	419
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	420
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	421 ]]>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	422 </token>
6 5c1b09e05757 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9 iuc parents: 4 diff changeset	423 <xml name="citations">
5c1b09e05757 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9 iuc parents: 4 diff changeset	424 <citations>
5c1b09e05757 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9 iuc parents: 4 diff changeset	425 <citation type="doi">10.12688/f1000research.16450.1</citation>
5c1b09e05757 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9 iuc parents: 4 diff changeset	426 <yield />
5c1b09e05757 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9 iuc parents: 4 diff changeset	427 </citations>
5c1b09e05757 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9 iuc parents: 4 diff changeset	428 </xml>
5c1b09e05757 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9 iuc parents: 4 diff changeset	429
0 6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	430
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	431 </macros>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	432

Mercurial > repos > iuc > filter_tabular

annotate macros.xml @ 8:59278960a2e7 draft