Mercurial > repos > iuc > find_nested_alt_orfs

annotate test-data/twobit.loc @ 0:14f4c7a8a962 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
author iuc
date Mon, 11 Apr 2022 20:37:19 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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1 #This is a sample file distributed with Galaxy that is used by some
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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2 #tools. The twobit.loc file has this format (white space characters
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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3 #are TAB characters):
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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4 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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5 #<Build> <FullPathToFile>
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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6 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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7 #So, for example, if you had droPer1 twobit files stored in
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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8 #/depot/data2/galaxy/droPer1/, then the twobit.loc entry
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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9 #would look like this:
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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10 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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11 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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12 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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13 #and your /depot/data2/galaxy/droPer1/ directory would
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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14 #contain all of your twobit files (e.g.):
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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15 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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16 #-rw-rw-r-- 1 nate galaxy 48972650 2007-05-04 11:27 droPer1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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17 #...etc...
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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18 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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19 #Your twobit.loc file should include an entry per line for each twobit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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20 #file you have stored. For example:
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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21 #
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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22 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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23 #apiMel2 /depot/data2/galaxy/apiMel2/apiMel2.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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24 #droAna1 /depot/data2/galaxy/droAna1/droAna1.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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25 #droAna2 /depot/data2/galaxy/droAna2/droAna2.2bit
14f4c7a8a962 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
iuc
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26 #...etc...