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view test-data/UCSC_Main_on_Human_knownGene_region_chrM.gtf @ 0:5d17cf201540 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flair commit b80808c3c53775c3f323581efb44d124d6e8bd1a"
author iuc
date Fri, 27 Nov 2020 18:45:47 +0000
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chrM	hg38_knownGene	exon	577	647	0.000000	+	.	gene_id "ENST00000387314.1"; transcript_id "ENST00000387314.1"; 
chrM	hg38_knownGene	exon	648	1601	0.000000	+	.	gene_id "ENST00000389680.2"; transcript_id "ENST00000389680.2"; 
chrM	hg38_knownGene	exon	1602	1670	0.000000	+	.	gene_id "ENST00000387342.1"; transcript_id "ENST00000387342.1"; 
chrM	hg38_knownGene	exon	1671	3229	0.000000	+	.	gene_id "ENST00000387347.2"; transcript_id "ENST00000387347.2"; 
chrM	hg38_knownGene	exon	3230	3304	0.000000	+	.	gene_id "ENST00000386347.1"; transcript_id "ENST00000386347.1"; 
chrM	hg38_knownGene	start_codon	3307	3309	0.000000	+	.	gene_id "ENST00000361390.2"; transcript_id "ENST00000361390.2"; 
chrM	hg38_knownGene	CDS	3307	4259	0.000000	+	0	gene_id "ENST00000361390.2"; transcript_id "ENST00000361390.2"; 
chrM	hg38_knownGene	stop_codon	4260	4262	0.000000	+	.	gene_id "ENST00000361390.2"; transcript_id "ENST00000361390.2"; 
chrM	hg38_knownGene	exon	3307	4262	0.000000	+	.	gene_id "ENST00000361390.2"; transcript_id "ENST00000361390.2"; 
chrM	hg38_knownGene	exon	4263	4331	0.000000	+	.	gene_id "ENST00000387365.1"; transcript_id "ENST00000387365.1"; 
chrM	hg38_knownGene	exon	4329	4400	0.000000	-	.	gene_id "ENST00000387372.1"; transcript_id "ENST00000387372.1"; 
chrM	hg38_knownGene	exon	4402	4469	0.000000	+	.	gene_id "ENST00000387377.1"; transcript_id "ENST00000387377.1"; 
chrM	hg38_knownGene	start_codon	4470	4472	0.000000	+	.	gene_id "ENST00000361453.3"; transcript_id "ENST00000361453.3"; 
chrM	hg38_knownGene	CDS	4470	5508	0.000000	+	0	gene_id "ENST00000361453.3"; transcript_id "ENST00000361453.3"; 
chrM	hg38_knownGene	stop_codon	5509	5511	0.000000	+	.	gene_id "ENST00000361453.3"; transcript_id "ENST00000361453.3"; 
chrM	hg38_knownGene	exon	4470	5511	0.000000	+	.	gene_id "ENST00000361453.3"; transcript_id "ENST00000361453.3"; 
chrM	hg38_knownGene	exon	5512	5579	0.000000	+	.	gene_id "ENST00000387382.1"; transcript_id "ENST00000387382.1"; 
chrM	hg38_knownGene	exon	5587	5655	0.000000	-	.	gene_id "ENST00000387392.1"; transcript_id "ENST00000387392.1"; 
chrM	hg38_knownGene	exon	5657	5729	0.000000	-	.	gene_id "ENST00000387400.1"; transcript_id "ENST00000387400.1"; 
chrM	hg38_knownGene	exon	5761	5826	0.000000	-	.	gene_id "ENST00000387405.1"; transcript_id "ENST00000387405.1"; 
chrM	hg38_knownGene	exon	5826	5891	0.000000	-	.	gene_id "ENST00000387409.1"; transcript_id "ENST00000387409.1"; 
chrM	hg38_knownGene	start_codon	5904	5906	0.000000	+	.	gene_id "ENST00000361624.2"; transcript_id "ENST00000361624.2"; 
chrM	hg38_knownGene	CDS	5904	7442	0.000000	+	0	gene_id "ENST00000361624.2"; transcript_id "ENST00000361624.2"; 
chrM	hg38_knownGene	stop_codon	7443	7445	0.000000	+	.	gene_id "ENST00000361624.2"; transcript_id "ENST00000361624.2"; 
chrM	hg38_knownGene	exon	5904	7445	0.000000	+	.	gene_id "ENST00000361624.2"; transcript_id "ENST00000361624.2"; 
chrM	hg38_knownGene	exon	7446	7514	0.000000	-	.	gene_id "ENST00000387416.2"; transcript_id "ENST00000387416.2"; 
chrM	hg38_knownGene	exon	7518	7585	0.000000	+	.	gene_id "ENST00000387419.1"; transcript_id "ENST00000387419.1"; 
chrM	hg38_knownGene	start_codon	7586	7588	0.000000	+	.	gene_id "ENST00000361739.1"; transcript_id "ENST00000361739.1"; 
chrM	hg38_knownGene	CDS	7586	8266	0.000000	+	0	gene_id "ENST00000361739.1"; transcript_id "ENST00000361739.1"; 
chrM	hg38_knownGene	stop_codon	8267	8269	0.000000	+	.	gene_id "ENST00000361739.1"; transcript_id "ENST00000361739.1"; 
chrM	hg38_knownGene	exon	7586	8269	0.000000	+	.	gene_id "ENST00000361739.1"; transcript_id "ENST00000361739.1"; 
chrM	hg38_knownGene	exon	8295	8364	0.000000	+	.	gene_id "ENST00000387421.1"; transcript_id "ENST00000387421.1"; 
chrM	hg38_knownGene	start_codon	8366	8368	0.000000	+	.	gene_id "ENST00000361851.1"; transcript_id "ENST00000361851.1"; 
chrM	hg38_knownGene	CDS	8366	8569	0.000000	+	0	gene_id "ENST00000361851.1"; transcript_id "ENST00000361851.1"; 
chrM	hg38_knownGene	stop_codon	8570	8572	0.000000	+	.	gene_id "ENST00000361851.1"; transcript_id "ENST00000361851.1"; 
chrM	hg38_knownGene	exon	8366	8572	0.000000	+	.	gene_id "ENST00000361851.1"; transcript_id "ENST00000361851.1"; 
chrM	hg38_knownGene	start_codon	8527	8529	0.000000	+	.	gene_id "ENST00000361899.2"; transcript_id "ENST00000361899.2"; 
chrM	hg38_knownGene	CDS	8527	9204	0.000000	+	0	gene_id "ENST00000361899.2"; transcript_id "ENST00000361899.2"; 
chrM	hg38_knownGene	stop_codon	9205	9207	0.000000	+	.	gene_id "ENST00000361899.2"; transcript_id "ENST00000361899.2"; 
chrM	hg38_knownGene	exon	8527	9207	0.000000	+	.	gene_id "ENST00000361899.2"; transcript_id "ENST00000361899.2"; 
chrM	hg38_knownGene	start_codon	9207	9209	0.000000	+	.	gene_id "ENST00000362079.2"; transcript_id "ENST00000362079.2"; 
chrM	hg38_knownGene	CDS	9207	9987	0.000000	+	0	gene_id "ENST00000362079.2"; transcript_id "ENST00000362079.2"; 
chrM	hg38_knownGene	stop_codon	9988	9990	0.000000	+	.	gene_id "ENST00000362079.2"; transcript_id "ENST00000362079.2"; 
chrM	hg38_knownGene	exon	9207	9990	0.000000	+	.	gene_id "ENST00000362079.2"; transcript_id "ENST00000362079.2"; 
chrM	hg38_knownGene	exon	9991	10058	0.000000	+	.	gene_id "ENST00000387429.1"; transcript_id "ENST00000387429.1"; 
chrM	hg38_knownGene	start_codon	10059	10061	0.000000	+	.	gene_id "ENST00000361227.2"; transcript_id "ENST00000361227.2"; 
chrM	hg38_knownGene	CDS	10059	10401	0.000000	+	0	gene_id "ENST00000361227.2"; transcript_id "ENST00000361227.2"; 
chrM	hg38_knownGene	stop_codon	10402	10404	0.000000	+	.	gene_id "ENST00000361227.2"; transcript_id "ENST00000361227.2"; 
chrM	hg38_knownGene	exon	10059	10404	0.000000	+	.	gene_id "ENST00000361227.2"; transcript_id "ENST00000361227.2"; 
chrM	hg38_knownGene	exon	10405	10469	0.000000	+	.	gene_id "ENST00000387439.1"; transcript_id "ENST00000387439.1"; 
chrM	hg38_knownGene	start_codon	10470	10472	0.000000	+	.	gene_id "ENST00000361335.1"; transcript_id "ENST00000361335.1"; 
chrM	hg38_knownGene	CDS	10470	10763	0.000000	+	0	gene_id "ENST00000361335.1"; transcript_id "ENST00000361335.1"; 
chrM	hg38_knownGene	stop_codon	10764	10766	0.000000	+	.	gene_id "ENST00000361335.1"; transcript_id "ENST00000361335.1"; 
chrM	hg38_knownGene	exon	10470	10766	0.000000	+	.	gene_id "ENST00000361335.1"; transcript_id "ENST00000361335.1"; 
chrM	hg38_knownGene	start_codon	10760	10762	0.000000	+	.	gene_id "ENST00000361381.2"; transcript_id "ENST00000361381.2"; 
chrM	hg38_knownGene	CDS	10760	12134	0.000000	+	0	gene_id "ENST00000361381.2"; transcript_id "ENST00000361381.2"; 
chrM	hg38_knownGene	stop_codon	12135	12137	0.000000	+	.	gene_id "ENST00000361381.2"; transcript_id "ENST00000361381.2"; 
chrM	hg38_knownGene	exon	10760	12137	0.000000	+	.	gene_id "ENST00000361381.2"; transcript_id "ENST00000361381.2"; 
chrM	hg38_knownGene	exon	12138	12206	0.000000	+	.	gene_id "ENST00000387441.1"; transcript_id "ENST00000387441.1"; 
chrM	hg38_knownGene	exon	12207	12265	0.000000	+	.	gene_id "ENST00000387449.1"; transcript_id "ENST00000387449.1"; 
chrM	hg38_knownGene	exon	12266	12336	0.000000	+	.	gene_id "ENST00000387456.1"; transcript_id "ENST00000387456.1"; 
chrM	hg38_knownGene	start_codon	12337	12339	0.000000	+	.	gene_id "ENST00000361567.2"; transcript_id "ENST00000361567.2"; 
chrM	hg38_knownGene	CDS	12337	14145	0.000000	+	0	gene_id "ENST00000361567.2"; transcript_id "ENST00000361567.2"; 
chrM	hg38_knownGene	stop_codon	14146	14148	0.000000	+	.	gene_id "ENST00000361567.2"; transcript_id "ENST00000361567.2"; 
chrM	hg38_knownGene	exon	12337	14148	0.000000	+	.	gene_id "ENST00000361567.2"; transcript_id "ENST00000361567.2"; 
chrM	hg38_knownGene	stop_codon	14149	14151	0.000000	-	.	gene_id "ENST00000361681.2"; transcript_id "ENST00000361681.2"; 
chrM	hg38_knownGene	CDS	14152	14673	0.000000	-	0	gene_id "ENST00000361681.2"; transcript_id "ENST00000361681.2"; 
chrM	hg38_knownGene	start_codon	14671	14673	0.000000	-	.	gene_id "ENST00000361681.2"; transcript_id "ENST00000361681.2"; 
chrM	hg38_knownGene	exon	14149	14673	0.000000	-	.	gene_id "ENST00000361681.2"; transcript_id "ENST00000361681.2"; 
chrM	hg38_knownGene	exon	14674	14742	0.000000	-	.	gene_id "ENST00000387459.1"; transcript_id "ENST00000387459.1"; 
chrM	hg38_knownGene	start_codon	14747	14749	0.000000	+	.	gene_id "ENST00000361789.2"; transcript_id "ENST00000361789.2"; 
chrM	hg38_knownGene	CDS	14747	15884	0.000000	+	0	gene_id "ENST00000361789.2"; transcript_id "ENST00000361789.2"; 
chrM	hg38_knownGene	stop_codon	15885	15887	0.000000	+	.	gene_id "ENST00000361789.2"; transcript_id "ENST00000361789.2"; 
chrM	hg38_knownGene	exon	14747	15887	0.000000	+	.	gene_id "ENST00000361789.2"; transcript_id "ENST00000361789.2"; 
chrM	hg38_knownGene	exon	15888	15953	0.000000	+	.	gene_id "ENST00000387460.2"; transcript_id "ENST00000387460.2"; 
chrM	hg38_knownGene	exon	15956	16023	0.000000	-	.	gene_id "ENST00000387461.2"; transcript_id "ENST00000387461.2";