Mercurial > repos > iuc > flair_collapse

comparison flair_collapse.xml @ 1:03b7b7811ea6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flair commit 41f4293e4db957a23f3be9ff76874a8619e803a2"
author iuc
date Fri, 09 Apr 2021 21:15:09 +0000
parents 57dc46adf2da
children 1fdcbfcca71c
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0:57dc46adf2da 1:03b7b7811ea6
1 <tool id="flair_collapse" name="FLAIR collapse" version="@TOOL_VERSION@" profile="20.01"> 1 <tool id="flair_collapse" name="FLAIR collapse" version="@TOOL_VERSION@+galaxy0" profile="20.01">
2 <description>defines high-confidence isoforms from flair-corrected reads</description> 2 <description>defines high-confidence isoforms from flair-corrected reads</description>
3 3
4 <macros> 4 <macros>
5 <import>flair_macros.xml</import> 5 <import>flair_macros.xml</import>
6 </macros> 6 </macros>
54 ######### 54 #########
55 55
56 ]]></command> 56 ]]></command>
57 <inputs> 57 <inputs>
58 <param name="input_query" argument="-q" type="data" format="bed" label="Corrected Reads as BED file"/> 58 <param name="input_query" argument="-q" type="data" format="bed" label="Corrected Reads as BED file"/>
59 <param name="input_reads" argument="-r" type="data" format="fasta,fastq" label="FASTA/FASTQ file of raw reads"/> 59 <param name="input_reads" argument="-r" type="data" format="fasta,fasta.gz,fastq,fastq.gz" label="FASTA/FASTQ file of raw reads"/>
60 <expand macro="reference_interface" /> 60 <expand macro="reference_interface" />
61 <param name="input_gtf" argument="-f" type="data" format="gtf" label="GTF annotation file"/> 61 <param name="input_gtf" argument="-f" type="data" format="gtf" label="GTF annotation file"/>
62 <param name="input_promotors" optional="true" argument="-p" type="data" format="bed" label="Promotor BED file to identify full-length reads" /> 62 <param name="input_promotors" optional="true" argument="-p" type="data" format="bed" label="Promotor BED file to identify full-length reads" />
63 63
64 <!-- Additional Options --> 64 <!-- Additional Options -->