Mercurial > repos > iuc > flair_collapse

diff flair_collapse.xml @ 1:03b7b7811ea6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flair commit 41f4293e4db957a23f3be9ff76874a8619e803a2"
author iuc
date Fri, 09 Apr 2021 21:15:09 +0000
parents 57dc46adf2da
children 1fdcbfcca71c
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--- a/flair_collapse.xml	Fri Nov 27 21:56:08 2020 +0000
+++ b/flair_collapse.xml	Fri Apr 09 21:15:09 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="flair_collapse" name="FLAIR collapse" version="@TOOL_VERSION@" profile="20.01">
+<tool id="flair_collapse" name="FLAIR collapse" version="@TOOL_VERSION@+galaxy0" profile="20.01">
     <description>defines high-confidence isoforms from flair-corrected reads</description>
 
     <macros>
@@ -56,7 +56,7 @@
     ]]></command>
     <inputs>
         <param name="input_query" argument="-q" type="data" format="bed" label="Corrected Reads as BED file"/>
-        <param name="input_reads" argument="-r" type="data" format="fasta,fastq" label="FASTA/FASTQ file of raw reads"/>
+        <param name="input_reads" argument="-r" type="data" format="fasta,fasta.gz,fastq,fastq.gz" label="FASTA/FASTQ file of raw reads"/>
         <expand macro="reference_interface" />
         <param name="input_gtf" argument="-f" type="data" format="gtf" label="GTF annotation file"/>
         <param name="input_promotors" optional="true" argument="-p" type="data" format="bed" label="Promotor BED file to identify full-length reads" />