Mercurial > repos > iuc > flash

annotate flash.xml @ 0:13e98e2709b8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
author iuc
date Tue, 26 Sep 2017 16:42:09 -0400
parents
children d043b54b3bfb
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
2 <tool id="flash" name="FLASH" version="1.2.11">
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
3 <description>adjust length of short reads</description>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
4 <requirements>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
5 <requirement type="package" version="1.2.11">flash</requirement>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
6 </requirements>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
7 <version_command>flash --version | head -n 1</version_command>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
8 <command detect_errors="aggressive">
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
9 <![CDATA[
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
10 flash --threads=\${GALAXY_SLOTS:-1}
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
11 -m $min_overlap
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
12 -M $max_overlap
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
13 -x $max_mismatch_density
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
14 $allow_outies
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
15 '$forward' '$reverse'
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
16 ]]>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
17 </command>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
18 <inputs>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
19 <param format="fastq" name="forward" type="data" label="Forward reads" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
20 <param format="fastq" name="reverse" type="data" label="Reverse reads" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
21 <param name="min_overlap" argument="--min-overlap" type="integer" optional="true" value="10" label="Minimum overlap" help="The minimum required overlap length between two reads to provide a confident overlap." />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
22 <param name="max_overlap" argument="--max-overlap" type="integer" optional="true" value="65" label="Maximum overlap" help="Maximum overlap length expected in approximately 90% of read pairs. Overlaps longer than the maximum overlap parameter are still considered as good overlaps, but the mismatch density is calculated over the first max_overlap bases in the overlapped region rather than the entire overlap." />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
23 <param name="max_mismatch_density" argument="--max-mismatch-density" type="float" optional="true" value="0.25" label="Maximum mismatch density" help="Maximum allowed ratio between the number of mismatched base pairs and the overlap length. Two reads will not be combined with a given overlap if that overlap results in a mismatched base density higher than this value." />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
24 <param name="allow_outies" argument="--allow-outies" type="boolean" truevalue="--allow-outies" falsevalue="" checked="false" label="Combine read pairs in both orientations" help="FLASH uses the same parameters when trying each orientation. If a read pair can be combined in either orientation, the better-fitting one will be chosen using the same scoring algorithm that FLASH normally uses." />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
25 </inputs>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
26 <outputs>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
27 <data format="fastq" name="merged_reads" from_work_dir="out.extendedFrags.fastq" label="${tool.name} on ${on_string}: Merged reads" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
28 <data format="fastq" name="unmerged_reads_f" from_work_dir="out.notCombined_1.fastq" label="${tool.name} on ${on_string}: Unmerged forward reads" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
29 <data format="fastq" name="unmerged_reads_r" from_work_dir="out.notCombined_2.fastq" label="${tool.name} on ${on_string}: Unmerged reverse reads" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
30 <data format="tabular" name="hist" from_work_dir="out.hist" label="${tool.name} on ${on_string}: Unmerged reads tabular histogram" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
31 <data format="txt" name="histogram" from_work_dir="out.histogram" label="${tool.name} on ${on_string}: Unmerged reads histogram" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
32 <data format="tabular" name="hist_in" from_work_dir="out.hist.innie" label="${tool.name} on ${on_string}: Unmerged reads tabular histogram (in)" >
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
33 <filter>allow_outies</filter>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
34 </data>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
35 <data format="tabular" name="hist_out" from_work_dir="out.hist.outie" label="${tool.name} on ${on_string}: Unmerged reads tabular histogram (out)" >
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
36 <filter>allow_outies</filter>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
37 </data>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
38 <data format="txt" name="histogram_in" from_work_dir="out.histogram.innie" label="${tool.name} on ${on_string}: Unmerged reads histogram (in)" >
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
39 <filter>allow_outies</filter>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
40 </data>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
41 <data format="txt" name="histogram_out" from_work_dir="out.histogram.outie" label="${tool.name} on ${on_string}: Unmerged reads histogram (out)" >
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
42 <filter>allow_outies</filter>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
43 </data>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
44 </outputs>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
45 <tests>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
46 <test>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
47 <param name="forward" value="flash_forward_in1.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
48 <param name="reverse" value="flash_reverse_in1.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
49 <output name="merged_reads" file="flash_merged_out1.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
50 <output name="unmerged_reads_f" file="flash_unmerged_f_out1.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
51 <output name="unmerged_reads_r" file="flash_unmerged_r_out1.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
52 <output name="hist" file="flash_hist_out1.tabular" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
53 <output name="histogram" file="flash_hist_out1.txt" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
54 </test>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
55 <test>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
56 <param name="forward" value="flash_forward_in2.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
57 <param name="reverse" value="flash_reverse_in2.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
58 <param name="allow_outies" value="true" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
59 <output name="merged_reads" file="flash_merged_out2.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
60 <output name="unmerged_reads_f" file="flash_unmerged_f_out2.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
61 <output name="unmerged_reads_r" file="flash_unmerged_r_out2.fastq" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
62 <output name="hist" file="flash_hist_out2.tabular" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
63 <output name="histogram" file="flash_hist_out2.txt" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
64 <output name="hist_in" file="flash_hist_in_out2.tabular" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
65 <output name="histogram_in" file="flash_hist_in_out2.txt" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
66 <output name="hist_out" file="flash_hist_out_out2.tabular" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
67 <output name="histogram_out" file="flash_hist_out_out2.txt" />
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
68 </test>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
69 </tests>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
70 <help>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
71 <![CDATA[
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
72 FLASH (Fast Length Adjustment of SHort reads) is an accurate and fast tool
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
73 to merge paired-end reads that were generated from DNA fragments whose
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
74 lengths are shorter than twice the length of reads. Merged read pairs result
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
75 in unpaired longer reads, which are generally more desired in genome
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
76 assembly and genome analysis processes.
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
77
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
78 Briefly, the FLASH algorithm considers all possible overlaps at or above a
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
79 minimum length between the reads in a pair and chooses the overlap that
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
80 results in the lowest mismatch density (proportion of mismatched bases in
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
81 the overlapped region). Ties between multiple overlaps are broken by
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
82 considering quality scores at mismatch sites. When building the merged
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
83 sequence, FLASH computes a consensus sequence in the overlapped region.
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
84 ]]>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
85 </help>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
86 <citations>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
87 <citation type="doi">10.1093/bioinformatics/btr507</citation>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
88 </citations>
13e98e2709b8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash commit 48012d1879395ecf1b4e6cd962f325c372164a33
iuc
parents:
diff changeset
89 </tool>