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comparison macros.xml @ 12:732927f5b015 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8341270dd36185ebf59d15282bc79f1215e936a4
author iuc
date Fri, 07 Mar 2025 22:35:55 +0000
parents 9c15ca7e764e
children
comparison
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11:9c15ca7e764e 12:732927f5b015
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">1.8.15</token> 3 <token name="@TOOL_VERSION@">1.8.17</token>
4 <token name="@VERSION_SUFFIX@">5</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 <xml name="biotools"> 5 <xml name="biotools">
6 <xrefs> 6 <xrefs>
7 <xref type="bio.tools"> 7 <xref type="bio.tools">
8 funannotate 8 funannotate
9 </xref> 9 </xref>
17 <citations> 17 <citations>
18 <citation type="doi">10.5281/zenodo.4054262</citation> 18 <citation type="doi">10.5281/zenodo.4054262</citation>
19 </citations> 19 </citations>
20 </xml> 20 </xml>
21 21
22 <xml name="augustus_species"> 22 <xml name="busco_species">
23 <!-- list generated from a Funannotate database directory, listing trained_species/* --> 23 <options from_data_table="funannotate_options">
24 <option value="adorsata">adorsata</option> 24 <column name="value" index="0" />
25 <option value="aedes">aedes</option> 25 <column name="name" index="1" />
26 <option value="amphimedon">amphimedon</option> 26 <filter type="static_value" column="2" value="busco_db"/>
27 <option value="ancylostoma_ceylanicum">ancylostoma_ceylanicum</option> 27 <filter type="param_value" column="3" ref="database"/>
28 <option value="anidulans">anidulans</option> 28 <filter type="add_value" value="dikarya" name="Dikarya" index="0"/> <!-- this sets the default -->
29 <option value="arabidopsis">arabidopsis</option> 29 </options>
30 <option value="aspergillus_fumigatus">aspergillus_fumigatus</option>
31 <option value="aspergillus_nidulans">aspergillus_nidulans</option>
32 <option value="aspergillus_oryzae">aspergillus_oryzae</option>
33 <option value="aspergillus_terreus">aspergillus_terreus</option>
34 <option value="bombus_impatiens1">bombus_impatiens1</option>
35 <option value="bombus_terrestris2">bombus_terrestris2</option>
36 <option value="botrytis_cinerea">botrytis_cinerea</option>
37 <option value="b_pseudomallei">b_pseudomallei</option>
38 <option value="brugia">brugia</option>
39 <option value="cacao">cacao</option>
40 <option value="caenorhabditis">caenorhabditis</option>
41 <option value="camponotus_floridanus">camponotus_floridanus</option>
42 <option value="candida_albicans">candida_albicans</option>
43 <option value="candida_guilliermondii">candida_guilliermondii</option>
44 <option value="candida_tropicalis">candida_tropicalis</option>
45 <option value="c_elegans_trsk">c_elegans_trsk</option>
46 <option value="chaetomium_globosum">chaetomium_globosum</option>
47 <option value="chicken">chicken</option>
48 <option value="chiloscyllium">chiloscyllium</option>
49 <option value="chlamy2011">chlamy2011</option>
50 <option value="chlamydomonas">chlamydomonas</option>
51 <option value="chlorella">chlorella</option>
52 <option value="ciona">ciona</option>
53 <option value="coccidioides_immitis">coccidioides_immitis</option>
54 <option value="Conidiobolus_coronatus">Conidiobolus_coronatus</option>
55 <option value="coprinus">coprinus</option>
56 <option value="coprinus_cinereus">coprinus_cinereus</option>
57 <option value="coyote_tobacco">coyote_tobacco</option>
58 <option value="cryptococcus">cryptococcus</option>
59 <option value="cryptococcus_neoformans_gattii">cryptococcus_neoformans_gattii</option>
60 <option value="cryptococcus_neoformans_neoformans_B">cryptococcus_neoformans_neoformans_B</option>
61 <option value="cryptococcus_neoformans_neoformans_JEC21">cryptococcus_neoformans_neoformans_JEC21</option>
62 <option value="culex">culex</option>
63 <option value="debaryomyces_hansenii">debaryomyces_hansenii</option>
64 <option value="E_coli_K12">E_coli_K12</option>
65 <option value="elephant_shark">elephant_shark</option>
66 <option value="encephalitozoon_cuniculi_GB">encephalitozoon_cuniculi_GB</option>
67 <option value="eremothecium_gossypii">eremothecium_gossypii</option>
68 <option value="fly">fly</option>
69 <option value="fly_exp">fly_exp</option>
70 <option value="fusarium">fusarium</option>
71 <option value="fusarium_graminearum">fusarium_graminearum</option>
72 <option value="galdieria">galdieria</option>
73 <option value="generic">generic</option>
74 <option value="heliconius_melpomene1">heliconius_melpomene1</option>
75 <option value="histoplasma">histoplasma</option>
76 <option value="histoplasma_capsulatum">histoplasma_capsulatum</option>
77 <option value="honeybee1">honeybee1</option>
78 <option value="human">human</option>
79 <option value="japaneselamprey">japaneselamprey</option>
80 <option value="kluyveromyces_lactis">kluyveromyces_lactis</option>
81 <option value="laccaria_bicolor">laccaria_bicolor</option>
82 <option value="leishmania_tarentolae">leishmania_tarentolae</option>
83 <option value="lodderomyces_elongisporus">lodderomyces_elongisporus</option>
84 <option value="magnaporthe_grisea">magnaporthe_grisea</option>
85 <option value="maize">maize</option>
86 <option value="maize5">maize5</option>
87 <option value="mnemiopsis_leidyi">mnemiopsis_leidyi</option>
88 <option value="nasonia">nasonia</option>
89 <option value="nematostella_vectensis">nematostella_vectensis</option>
90 <option value="neurospora">neurospora</option>
91 <option value="neurospora_crassa">neurospora_crassa</option>
92 <option value="parasteatoda">parasteatoda</option>
93 <option value="pchrysosporium">pchrysosporium</option>
94 <option value="pea_aphid">pea_aphid</option>
95 <option value="pfalciparum">pfalciparum</option>
96 <option value="phanerochaete_chrysosporium">phanerochaete_chrysosporium</option>
97 <option value="pichia_stipitis">pichia_stipitis</option>
98 <option value="pisaster">pisaster</option>
99 <option value="pneumocystis">pneumocystis</option>
100 <option value="rhincodon">rhincodon</option>
101 <option value="rhizopus_oryzae">rhizopus_oryzae</option>
102 <option value="rhodnius">rhodnius</option>
103 <option value="rice">rice</option>
104 <option value="saccharomyces">saccharomyces</option>
105 <option value="saccharomyces_cerevisiae_rm11-1a_1">saccharomyces_cerevisiae_rm11-1a_1</option>
106 <option value="saccharomyces_cerevisiae_S288C">saccharomyces_cerevisiae_S288C</option>
107 <option value="s_aureus">s_aureus</option>
108 <option value="schistosoma">schistosoma</option>
109 <option value="schistosoma2">schistosoma2</option>
110 <option value="schizosaccharomyces_pombe">schizosaccharomyces_pombe</option>
111 <option value="scyliorhinus">scyliorhinus</option>
112 <option value="sealamprey">sealamprey</option>
113 <option value="s_pneumoniae">s_pneumoniae</option>
114 <option value="strongylocentrotus_purpuratus">strongylocentrotus_purpuratus</option>
115 <option value="sulfolobus_solfataricus">sulfolobus_solfataricus</option>
116 <option value="template_prokaryotic">template_prokaryotic</option>
117 <option value="tetrahymena">tetrahymena</option>
118 <option value="thermoanaerobacter_tengcongensis">thermoanaerobacter_tengcongensis</option>
119 <option value="tomato">tomato</option>
120 <option value="toxoplasma">toxoplasma</option>
121 <option value="tribolium2012">tribolium2012</option>
122 <option value="trichinella">trichinella</option>
123 <option value="ustilago">ustilago</option>
124 <option value="ustilago_maydis">ustilago_maydis</option>
125 <option value="verticillium_albo_atrum1">verticillium_albo_atrum1</option>
126 <option value="verticillium_longisporum1">verticillium_longisporum1</option>
127 <option value="volvox">volvox</option>
128 <option value="wheat">wheat</option>
129 <option value="Xipophorus_maculatus">Xipophorus_maculatus</option>
130 <option value="yarrowia_lipolytica">yarrowia_lipolytica</option>
131 <option value="zebrafish">zebrafish</option>
132 </xml> 30 </xml>
133 31
134 <xml name="busco_species"> 32
135 <!-- list generated from a Funannotate database directory, with the "funannotate database -show-buscos command" --> 33 <xml name="busco_seeds">
136 <option value="eukaryota">eukaryota</option> 34 <options from_data_table="funannotate_options">
137 <option value="metazoa">metazoa</option> 35 <column name="value" index="0" />
138 <option value="nematoda">nematoda</option> 36 <column name="name" index="1" />
139 <option value="arthropoda">arthropoda</option> 37 <filter type="static_value" column="2" value="trained_species"/>
140 <option value="insecta">insecta</option> 38 <filter type="param_value" column="3" ref="database"/>
141 <option value="endopterygota">endopterygota</option> 39 <yield/>
142 <option value="hymenoptera">hymenoptera</option> 40 </options>
143 <option value="diptera">diptera</option>
144 <option value="vertebrata">vertebrata</option>
145 <option value="actinopterygii">actinopterygii</option>
146 <option value="tetrapoda">tetrapoda</option>
147 <option value="aves">aves</option>
148 <option value="mammalia">mammalia</option>
149 <option value="euarchontoglires">euarchontoglires</option>
150 <option value="laurasiatheria">laurasiatheria</option>
151 <option value="fungi">fungi</option>
152 <option value="dikarya">dikarya</option>
153 <option value="ascomycota">ascomycota</option>
154 <option value="pezizomycotina">pezizomycotina</option>
155 <option value="eurotiomycetes">eurotiomycetes</option>
156 <option value="sordariomycetes">sordariomycetes</option>
157 <option value="saccharomycetes">saccharomycetes</option>
158 <option value="saccharomycetales">saccharomycetales</option>
159 <option value="basidiomycota">basidiomycota</option>
160 <option value="microsporidia">microsporidia</option>
161 <option value="embryophyta">embryophyta</option>
162 <option value="protists">protists</option>
163 <option value="alveolata_stramenophiles">alveolata_stramenophiles</option>
164 <!-- These datasets are additional BUSCO orthodb 10 datasets, they are not yet bundled
165 with funannonate db, but they can be used safely. -->
166 <option value="acidobacteria_odb10">acidobacteria (orthodb 10)</option>
167 <option value="aconoidasida_odb10">aconoidasida (orthodb 10)</option>
168 <option value="actinobacteria_class_odb10">actinobacteria_class (orthodb 10)</option>
169 <option value="actinobacteria_phylum_odb10">actinobacteria_phylum (orthodb 10)</option>
170 <option value="actinopterygii_odb10">actinopterygii (orthodb 10)</option>
171 <option value="agaricales_odb10">agaricales (orthodb 10)</option>
172 <option value="agaricomycetes_odb10">agaricomycetes (orthodb 10)</option>
173 <option value="alphabaculovirus_odb10">alphabaculovirus (orthodb 10)</option>
174 <option value="alphaherpesvirinae_odb10">alphaherpesvirinae (orthodb 10)</option>
175 <option value="alphaproteobacteria_odb10">alphaproteobacteria (orthodb 10)</option>
176 <option value="alteromonadales_odb10">alteromonadales (orthodb 10)</option>
177 <option value="alveolata_odb10">alveolata (orthodb 10)</option>
178 <option value="apicomplexa_odb10">apicomplexa (orthodb 10)</option>
179 <option value="aquificae_odb10">aquificae (orthodb 10)</option>
180 <option value="arachnida_odb10">arachnida (orthodb 10)</option>
181 <option value="archaea_odb10">archaea (orthodb 10)</option>
182 <option value="arthropoda_odb10">arthropoda (orthodb 10)</option>
183 <option value="ascomycota_odb10">ascomycota (orthodb 10)</option>
184 <option value="aves_odb10">aves (orthodb 10)</option>
185 <option value="aviadenovirus_odb10">aviadenovirus (orthodb 10)</option>
186 <option value="bacillales_odb10">bacillales (orthodb 10)</option>
187 <option value="bacilli_odb10">bacilli (orthodb 10)</option>
188 <option value="bacteria_odb10">bacteria (orthodb 10)</option>
189 <option value="bacteroidales_odb10">bacteroidales (orthodb 10)</option>
190 <option value="bacteroidetes-chlorobi_group_odb10">bacteroidetes-chlorobi_group (orthodb 10)</option>
191 <option value="bacteroidetes_odb10">bacteroidetes (orthodb 10)</option>
192 <option value="bacteroidia_odb10">bacteroidia (orthodb 10)</option>
193 <option value="baculoviridae_odb10">baculoviridae (orthodb 10)</option>
194 <option value="basidiomycota_odb10">basidiomycota (orthodb 10)</option>
195 <option value="bclasvirinae_odb10">bclasvirinae (orthodb 10)</option>
196 <option value="betabaculovirus_odb10">betabaculovirus (orthodb 10)</option>
197 <option value="betaherpesvirinae_odb10">betaherpesvirinae (orthodb 10)</option>
198 <option value="betaproteobacteria_odb10">betaproteobacteria (orthodb 10)</option>
199 <option value="boletales_odb10">boletales (orthodb 10)</option>
200 <option value="brassicales_odb10">brassicales (orthodb 10)</option>
201 <option value="burkholderiales_odb10">burkholderiales (orthodb 10)</option>
202 <option value="campylobacterales_odb10">campylobacterales (orthodb 10)</option>
203 <option value="capnodiales_odb10">capnodiales (orthodb 10)</option>
204 <option value="carnivora_odb10">carnivora (orthodb 10)</option>
205 <option value="cellvibrionales_odb10">cellvibrionales (orthodb 10)</option>
206 <option value="cetartiodactyla_odb10">cetartiodactyla (orthodb 10)</option>
207 <option value="chaetothyriales_odb10">chaetothyriales (orthodb 10)</option>
208 <option value="cheoctovirus_odb10">cheoctovirus (orthodb 10)</option>
209 <option value="chlamydiae_odb10">chlamydiae (orthodb 10)</option>
210 <option value="chlorobi_odb10">chlorobi (orthodb 10)</option>
211 <option value="chloroflexi_odb10">chloroflexi (orthodb 10)</option>
212 <option value="chlorophyta_odb10">chlorophyta (orthodb 10)</option>
213 <option value="chordopoxvirinae_odb10">chordopoxvirinae (orthodb 10)</option>
214 <option value="chromatiales_odb10">chromatiales (orthodb 10)</option>
215 <option value="chroococcales_odb10">chroococcales (orthodb 10)</option>
216 <option value="clostridia_odb10">clostridia (orthodb 10)</option>
217 <option value="clostridiales_odb10">clostridiales (orthodb 10)</option>
218 <option value="coccidia_odb10">coccidia (orthodb 10)</option>
219 <option value="coriobacteriales_odb10">coriobacteriales (orthodb 10)</option>
220 <option value="coriobacteriia_odb10">coriobacteriia (orthodb 10)</option>
221 <option value="corynebacteriales_odb10">corynebacteriales (orthodb 10)</option>
222 <option value="cyanobacteria_odb10">cyanobacteria (orthodb 10)</option>
223 <option value="cyprinodontiformes_odb10">cyprinodontiformes (orthodb 10)</option>
224 <option value="cytophagales_odb10">cytophagales (orthodb 10)</option>
225 <option value="cytophagia_odb10">cytophagia (orthodb 10)</option>
226 <option value="delta-epsilon-subdivisions_odb10">delta-epsilon-subdivisions (orthodb 10)</option>
227 <option value="deltaproteobacteria_odb10">deltaproteobacteria (orthodb 10)</option>
228 <option value="desulfobacterales_odb10">desulfobacterales (orthodb 10)</option>
229 <option value="desulfovibrionales_odb10">desulfovibrionales (orthodb 10)</option>
230 <option value="desulfurococcales_odb10">desulfurococcales (orthodb 10)</option>
231 <option value="desulfuromonadales_odb10">desulfuromonadales (orthodb 10)</option>
232 <option value="diptera_odb10">diptera (orthodb 10)</option>
233 <option value="dothideomycetes_odb10">dothideomycetes (orthodb 10)</option>
234 <option value="embryophyta_odb10">embryophyta (orthodb 10)</option>
235 <option value="endopterygota_odb10">endopterygota (orthodb 10)</option>
236 <option value="enquatrovirus_odb10">enquatrovirus (orthodb 10)</option>
237 <option value="enterobacterales_odb10">enterobacterales (orthodb 10)</option>
238 <option value="entomoplasmatales_odb10">entomoplasmatales (orthodb 10)</option>
239 <option value="epsilonproteobacteria_odb10">epsilonproteobacteria (orthodb 10)</option>
240 <option value="euarchontoglires_odb10">euarchontoglires (orthodb 10)</option>
241 <option value="eudicots_odb10">eudicots (orthodb 10)</option>
242 <option value="euglenozoa_odb10">euglenozoa (orthodb 10)</option>
243 <option value="eukaryota_odb10">eukaryota (orthodb 10)</option>
244 <option value="eurotiales_odb10">eurotiales (orthodb 10)</option>
245 <option value="eurotiomycetes_odb10">eurotiomycetes (orthodb 10)</option>
246 <option value="euryarchaeota_odb10">euryarchaeota (orthodb 10)</option>
247 <option value="eutheria_odb10">eutheria (orthodb 10)</option>
248 <option value="fabales_odb10">fabales (orthodb 10)</option>
249 <option value="firmicutes_odb10">firmicutes (orthodb 10)</option>
250 <option value="flavobacteriales_odb10">flavobacteriales (orthodb 10)</option>
251 <option value="flavobacteriia_odb10">flavobacteriia (orthodb 10)</option>
252 <option value="fromanvirus_odb10">fromanvirus (orthodb 10)</option>
253 <option value="fungi_odb10">fungi (orthodb 10)</option>
254 <option value="fusobacteria_odb10">fusobacteria (orthodb 10)</option>
255 <option value="fusobacteriales_odb10">fusobacteriales (orthodb 10)</option>
256 <option value="gammaherpesvirinae_odb10">gammaherpesvirinae (orthodb 10)</option>
257 <option value="gammaproteobacteria_odb10">gammaproteobacteria (orthodb 10)</option>
258 <option value="glires_odb10">glires (orthodb 10)</option>
259 <option value="glomerellales_odb10">glomerellales (orthodb 10)</option>
260 <option value="guernseyvirinae_odb10">guernseyvirinae (orthodb 10)</option>
261 <option value="halobacteria_odb10">halobacteria (orthodb 10)</option>
262 <option value="halobacteriales_odb10">halobacteriales (orthodb 10)</option>
263 <option value="haloferacales_odb10">haloferacales (orthodb 10)</option>
264 <option value="helotiales_odb10">helotiales (orthodb 10)</option>
265 <option value="hemiptera_odb10">hemiptera (orthodb 10)</option>
266 <option value="herpesviridae_odb10">herpesviridae (orthodb 10)</option>
267 <option value="hymenoptera_odb10">hymenoptera (orthodb 10)</option>
268 <option value="hypocreales_odb10">hypocreales (orthodb 10)</option>
269 <option value="insecta_odb10">insecta (orthodb 10)</option>
270 <option value="iridoviridae_odb10">iridoviridae (orthodb 10)</option>
271 <option value="lactobacillales_odb10">lactobacillales (orthodb 10)</option>
272 <option value="laurasiatheria_odb10">laurasiatheria (orthodb 10)</option>
273 <option value="legionellales_odb10">legionellales (orthodb 10)</option>
274 <option value="leotiomycetes_odb10">leotiomycetes (orthodb 10)</option>
275 <option value="lepidoptera_odb10">lepidoptera (orthodb 10)</option>
276 <option value="liliopsida_odb10">liliopsida (orthodb 10)</option>
277 <option value="mammalia_odb10">mammalia (orthodb 10)</option>
278 <option value="metazoa_odb10">metazoa (orthodb 10)</option>
279 <option value="methanobacteria_odb10">methanobacteria (orthodb 10)</option>
280 <option value="methanococcales_odb10">methanococcales (orthodb 10)</option>
281 <option value="methanomicrobia_odb10">methanomicrobia (orthodb 10)</option>
282 <option value="methanomicrobiales_odb10">methanomicrobiales (orthodb 10)</option>
283 <option value="micrococcales_odb10">micrococcales (orthodb 10)</option>
284 <option value="microsporidia_odb10">microsporidia (orthodb 10)</option>
285 <option value="mollicutes_odb10">mollicutes (orthodb 10)</option>
286 <option value="mollusca_odb10">mollusca (orthodb 10)</option>
287 <option value="mucorales_odb10">mucorales (orthodb 10)</option>
288 <option value="mucoromycota_odb10">mucoromycota (orthodb 10)</option>
289 <option value="mycoplasmatales_odb10">mycoplasmatales (orthodb 10)</option>
290 <option value="natrialbales_odb10">natrialbales (orthodb 10)</option>
291 <option value="neisseriales_odb10">neisseriales (orthodb 10)</option>
292 <option value="nematoda_odb10">nematoda (orthodb 10)</option>
293 <option value="nitrosomonadales_odb10">nitrosomonadales (orthodb 10)</option>
294 <option value="nostocales_odb10">nostocales (orthodb 10)</option>
295 <option value="oceanospirillales_odb10">oceanospirillales (orthodb 10)</option>
296 <option value="onygenales_odb10">onygenales (orthodb 10)</option>
297 <option value="oscillatoriales_odb10">oscillatoriales (orthodb 10)</option>
298 <option value="pahexavirus_odb10">pahexavirus (orthodb 10)</option>
299 <option value="passeriformes_odb10">passeriformes (orthodb 10)</option>
300 <option value="pasteurellales_odb10">pasteurellales (orthodb 10)</option>
301 <option value="peduovirus_odb10">peduovirus (orthodb 10)</option>
302 <option value="planctomycetes_odb10">planctomycetes (orthodb 10)</option>
303 <option value="plasmodium_odb10">plasmodium (orthodb 10)</option>
304 <option value="pleosporales_odb10">pleosporales (orthodb 10)</option>
305 <option value="poales_odb10">poales (orthodb 10)</option>
306 <option value="polyporales_odb10">polyporales (orthodb 10)</option>
307 <option value="poxviridae_odb10">poxviridae (orthodb 10)</option>
308 <option value="primates_odb10">primates (orthodb 10)</option>
309 <option value="propionibacteriales_odb10">propionibacteriales (orthodb 10)</option>
310 <option value="proteobacteria_odb10">proteobacteria (orthodb 10)</option>
311 <option value="pseudomonadales_odb10">pseudomonadales (orthodb 10)</option>
312 <option value="rhizobiales_odb10">rhizobiales (orthodb 10)</option>
313 <option value="rhizobium-agrobacterium_group_odb10">rhizobium-agrobacterium_group (orthodb 10)</option>
314 <option value="rhodobacterales_odb10">rhodobacterales (orthodb 10)</option>
315 <option value="rhodospirillales_odb10">rhodospirillales (orthodb 10)</option>
316 <option value="rickettsiales_odb10">rickettsiales (orthodb 10)</option>
317 <option value="rudiviridae_odb10">rudiviridae (orthodb 10)</option>
318 <option value="saccharomycetes_odb10">saccharomycetes (orthodb 10)</option>
319 <option value="sauropsida_odb10">sauropsida (orthodb 10)</option>
320 <option value="selenomonadales_odb10">selenomonadales (orthodb 10)</option>
321 <option value="simplexvirus_odb10">simplexvirus (orthodb 10)</option>
322 <option value="skunavirus_odb10">skunavirus (orthodb 10)</option>
323 <option value="solanales_odb10">solanales (orthodb 10)</option>
324 <option value="sordariomycetes_odb10">sordariomycetes (orthodb 10)</option>
325 <option value="sphingobacteriia_odb10">sphingobacteriia (orthodb 10)</option>
326 <option value="sphingomonadales_odb10">sphingomonadales (orthodb 10)</option>
327 <option value="spirochaetales_odb10">spirochaetales (orthodb 10)</option>
328 <option value="spirochaetes_odb10">spirochaetes (orthodb 10)</option>
329 <option value="spirochaetia_odb10">spirochaetia (orthodb 10)</option>
330 <option value="spounavirinae_odb10">spounavirinae (orthodb 10)</option>
331 <option value="stramenopiles_odb10">stramenopiles (orthodb 10)</option>
332 <option value="streptomycetales_odb10">streptomycetales (orthodb 10)</option>
333 <option value="streptosporangiales_odb10">streptosporangiales (orthodb 10)</option>
334 <option value="sulfolobales_odb10">sulfolobales (orthodb 10)</option>
335 <option value="synechococcales_odb10">synechococcales (orthodb 10)</option>
336 <option value="synergistetes_odb10">synergistetes (orthodb 10)</option>
337 <option value="tenericutes_odb10">tenericutes (orthodb 10)</option>
338 <option value="tequatrovirus_odb10">tequatrovirus (orthodb 10)</option>
339 <option value="teseptimavirus_odb10">teseptimavirus (orthodb 10)</option>
340 <option value="tetrapoda_odb10">tetrapoda (orthodb 10)</option>
341 <option value="tevenvirinae_odb10">tevenvirinae (orthodb 10)</option>
342 <option value="thaumarchaeota_odb10">thaumarchaeota (orthodb 10)</option>
343 <option value="thermoanaerobacterales_odb10">thermoanaerobacterales (orthodb 10)</option>
344 <option value="thermoplasmata_odb10">thermoplasmata (orthodb 10)</option>
345 <option value="thermoproteales_odb10">thermoproteales (orthodb 10)</option>
346 <option value="thermoprotei_odb10">thermoprotei (orthodb 10)</option>
347 <option value="thermotogae_odb10">thermotogae (orthodb 10)</option>
348 <option value="thiotrichales_odb10">thiotrichales (orthodb 10)</option>
349 <option value="tissierellales_odb10">tissierellales (orthodb 10)</option>
350 <option value="tissierellia_odb10">tissierellia (orthodb 10)</option>
351 <option value="tremellomycetes_odb10">tremellomycetes (orthodb 10)</option>
352 <option value="tunavirinae_odb10">tunavirinae (orthodb 10)</option>
353 <option value="varicellovirus_odb10">varicellovirus (orthodb 10)</option>
354 <option value="verrucomicrobia_odb10">verrucomicrobia (orthodb 10)</option>
355 <option value="vertebrata_odb10">vertebrata (orthodb 10)</option>
356 <option value="vibrionales_odb10">vibrionales (orthodb 10)</option>
357 <option value="viridiplantae_odb10">viridiplantae (orthodb 10)</option>
358 <option value="xanthomonadales_odb10">xanthomonadales (orthodb 10)</option>
359 </xml> 41 </xml>
360 </macros> 42 </macros>