Mercurial > repos > iuc > funannotate_annotate

comparison test-data/predict_scratch/Genus_species.gff3 @ 0:a5baa4ff168d draft

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"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:39:38 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:a5baa4ff168d
1 ##gff-version 3
2 sample funannotate gene 1092 1466 . - . ID=FUN_000001;
3 sample funannotate mRNA 1092 1466 . - . ID=FUN_000001-T1;Parent=FUN_000001;product=hypothetical protein;
4 sample funannotate exon 1092 1466 . - . ID=FUN_000001-T1.exon1;Parent=FUN_000001-T1;
5 sample funannotate CDS 1092 1466 . - 0 ID=FUN_000001-T1.cds;Parent=FUN_000001-T1;
6 sample funannotate gene 2565 3142 . - . ID=FUN_000002;
7 sample funannotate mRNA 2565 3142 . - . ID=FUN_000002-T1;Parent=FUN_000002;product=hypothetical protein;
8 sample funannotate exon 3138 3142 . - . ID=FUN_000002-T1.exon1;Parent=FUN_000002-T1;
9 sample funannotate exon 2883 3004 . - . ID=FUN_000002-T1.exon2;Parent=FUN_000002-T1;
10 sample funannotate exon 2565 2686 . - . ID=FUN_000002-T1.exon3;Parent=FUN_000002-T1;
11 sample funannotate CDS 3138 3142 . - 0 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
12 sample funannotate CDS 2883 3004 . - 1 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
13 sample funannotate CDS 2565 2686 . - 2 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
14 sample funannotate gene 4248 5802 . - . ID=FUN_000003;
15 sample funannotate mRNA 4248 5802 . - . ID=FUN_000003-T1;Parent=FUN_000003;product=hypothetical protein;
16 sample funannotate exon 5797 5802 . - . ID=FUN_000003-T1.exon1;Parent=FUN_000003-T1;
17 sample funannotate exon 4937 5539 . - . ID=FUN_000003-T1.exon2;Parent=FUN_000003-T1;
18 sample funannotate exon 4248 4742 . - . ID=FUN_000003-T1.exon3;Parent=FUN_000003-T1;
19 sample funannotate CDS 5797 5802 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
20 sample funannotate CDS 4937 5539 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
21 sample funannotate CDS 4248 4742 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
22 sample funannotate gene 7691 10664 . - . ID=FUN_000004;
23 sample funannotate mRNA 7691 10664 . - . ID=FUN_000004-T1;Parent=FUN_000004;product=hypothetical protein;
24 sample funannotate exon 10657 10664 . - . ID=FUN_000004-T1.exon1;Parent=FUN_000004-T1;
25 sample funannotate exon 8707 10499 . - . ID=FUN_000004-T1.exon2;Parent=FUN_000004-T1;
26 sample funannotate exon 7691 8385 . - . ID=FUN_000004-T1.exon3;Parent=FUN_000004-T1;
27 sample funannotate CDS 10657 10664 . - 0 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
28 sample funannotate CDS 8707 10499 . - 1 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
29 sample funannotate CDS 7691 8385 . - 2 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
30 sample funannotate gene 14247 15214 . - . ID=FUN_000005;
31 sample funannotate mRNA 14247 15214 . - . ID=FUN_000005-T1;Parent=FUN_000005;product=hypothetical protein;
32 sample funannotate exon 15209 15214 . - . ID=FUN_000005-T1.exon1;Parent=FUN_000005-T1;
33 sample funannotate exon 14247 14648 . - . ID=FUN_000005-T1.exon2;Parent=FUN_000005-T1;
34 sample funannotate CDS 15209 15214 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
35 sample funannotate CDS 14247 14648 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
36 sample funannotate gene 15539 16619 . + . ID=FUN_000006;
37 sample funannotate mRNA 15539 16619 . + . ID=FUN_000006-T1;Parent=FUN_000006;product=hypothetical protein;
38 sample funannotate exon 15539 15543 . + . ID=FUN_000006-T1.exon1;Parent=FUN_000006-T1;
39 sample funannotate exon 15646 15919 . + . ID=FUN_000006-T1.exon2;Parent=FUN_000006-T1;
40 sample funannotate exon 16485 16619 . + . ID=FUN_000006-T1.exon3;Parent=FUN_000006-T1;
41 sample funannotate CDS 15539 15543 . + 0 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
42 sample funannotate CDS 15646 15919 . + 1 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
43 sample funannotate CDS 16485 16619 . + 0 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
44 sample funannotate gene 18358 21705 . - . ID=FUN_000007;
45 sample funannotate mRNA 18358 21705 . - . ID=FUN_000007-T1;Parent=FUN_000007;product=hypothetical protein;
46 sample funannotate exon 21700 21705 . - . ID=FUN_000007-T1.exon1;Parent=FUN_000007-T1;
47 sample funannotate exon 19638 21515 . - . ID=FUN_000007-T1.exon2;Parent=FUN_000007-T1;
48 sample funannotate exon 18358 19482 . - . ID=FUN_000007-T1.exon3;Parent=FUN_000007-T1;
49 sample funannotate CDS 21700 21705 . - 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
50 sample funannotate CDS 19638 21515 . - 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
51 sample funannotate CDS 18358 19482 . - 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
52 sample funannotate gene 34843 35679 . - . ID=FUN_000008;
53 sample funannotate mRNA 34843 35679 . - . ID=FUN_000008-T1;Parent=FUN_000008;product=hypothetical protein;
54 sample funannotate exon 34843 35679 . - . ID=FUN_000008-T1.exon1;Parent=FUN_000008-T1;
55 sample funannotate CDS 34843 35679 . - 0 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
56 sample funannotate gene 40223 44130 . + . ID=FUN_000009;
57 sample funannotate mRNA 40223 44130 . + . ID=FUN_000009-T1;Parent=FUN_000009;product=hypothetical protein;
58 sample funannotate exon 40223 40396 . + . ID=FUN_000009-T1.exon1;Parent=FUN_000009-T1;
59 sample funannotate exon 40659 41193 . + . ID=FUN_000009-T1.exon2;Parent=FUN_000009-T1;
60 sample funannotate exon 41707 42080 . + . ID=FUN_000009-T1.exon3;Parent=FUN_000009-T1;
61 sample funannotate exon 43409 43609 . + . ID=FUN_000009-T1.exon4;Parent=FUN_000009-T1;
62 sample funannotate exon 43678 44130 . + . ID=FUN_000009-T1.exon5;Parent=FUN_000009-T1;
63 sample funannotate CDS 40223 40396 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
64 sample funannotate CDS 40659 41193 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
65 sample funannotate CDS 41707 42080 . + 2 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
66 sample funannotate CDS 43409 43609 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
67 sample funannotate CDS 43678 44130 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
68 sample funannotate gene 87202 88320 . + . ID=FUN_000010;
69 sample funannotate mRNA 87202 88320 . + . ID=FUN_000010-T1;Parent=FUN_000010;product=hypothetical protein;
70 sample funannotate exon 87202 87207 . + . ID=FUN_000010-T1.exon1;Parent=FUN_000010-T1;
71 sample funannotate exon 88054 88320 . + . ID=FUN_000010-T1.exon2;Parent=FUN_000010-T1;
72 sample funannotate CDS 87202 87207 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
73 sample funannotate CDS 88054 88320 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
74 sample funannotate gene 102510 106221 . - . ID=FUN_000011;
75 sample funannotate mRNA 102510 106221 . - . ID=FUN_000011-T1;Parent=FUN_000011;product=hypothetical protein;
76 sample funannotate exon 106216 106221 . - . ID=FUN_000011-T1.exon1;Parent=FUN_000011-T1;
77 sample funannotate exon 104258 104632 . - . ID=FUN_000011-T1.exon2;Parent=FUN_000011-T1;
78 sample funannotate exon 103696 103947 . - . ID=FUN_000011-T1.exon3;Parent=FUN_000011-T1;
79 sample funannotate exon 103229 103618 . - . ID=FUN_000011-T1.exon4;Parent=FUN_000011-T1;
80 sample funannotate exon 102510 103151 . - . ID=FUN_000011-T1.exon5;Parent=FUN_000011-T1;
81 sample funannotate CDS 106216 106221 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
82 sample funannotate CDS 104258 104632 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
83 sample funannotate CDS 103696 103947 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
84 sample funannotate CDS 103229 103618 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
85 sample funannotate CDS 102510 103151 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
86 sample funannotate gene 167121 169212 . + . ID=FUN_000012;
87 sample funannotate mRNA 167121 169212 . + . ID=FUN_000012-T1;Parent=FUN_000012;product=hypothetical protein;
88 sample funannotate exon 167121 168069 . + . ID=FUN_000012-T1.exon1;Parent=FUN_000012-T1;
89 sample funannotate exon 168722 169212 . + . ID=FUN_000012-T1.exon2;Parent=FUN_000012-T1;
90 sample funannotate CDS 167121 168069 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
91 sample funannotate CDS 168722 169212 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
92 sample funannotate gene 180262 180579 . + . ID=FUN_000013;
93 sample funannotate mRNA 180262 180579 . + . ID=FUN_000013-T1;Parent=FUN_000013;product=hypothetical protein;
94 sample funannotate exon 180262 180267 . + . ID=FUN_000013-T1.exon1;Parent=FUN_000013-T1;
95 sample funannotate exon 180400 180579 . + . ID=FUN_000013-T1.exon2;Parent=FUN_000013-T1;
96 sample funannotate CDS 180262 180267 . + 0 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
97 sample funannotate CDS 180400 180579 . + 0 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
98 sample funannotate gene 208619 210553 . - . ID=FUN_000014;
99 sample funannotate mRNA 208619 210553 . - . ID=FUN_000014-T1;Parent=FUN_000014;product=hypothetical protein;
100 sample funannotate exon 210548 210553 . - . ID=FUN_000014-T1.exon1;Parent=FUN_000014-T1;
101 sample funannotate exon 209053 210474 . - . ID=FUN_000014-T1.exon2;Parent=FUN_000014-T1;
102 sample funannotate exon 208619 208645 . - . ID=FUN_000014-T1.exon3;Parent=FUN_000014-T1;
103 sample funannotate CDS 210548 210553 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
104 sample funannotate CDS 209053 210474 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
105 sample funannotate CDS 208619 208645 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
106 sample4 funannotate gene 1092 1466 . - . ID=FUN_000015;
107 sample4 funannotate mRNA 1092 1466 . - . ID=FUN_000015-T1;Parent=FUN_000015;product=hypothetical protein;
108 sample4 funannotate exon 1092 1466 . - . ID=FUN_000015-T1.exon1;Parent=FUN_000015-T1;
109 sample4 funannotate CDS 1092 1466 . - 0 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
110 sample4 funannotate gene 2126 3537 . + . ID=FUN_000016;
111 sample4 funannotate mRNA 2126 3537 . + . ID=FUN_000016-T1;Parent=FUN_000016;product=hypothetical protein;
112 sample4 funannotate exon 2126 2199 . + . ID=FUN_000016-T1.exon1;Parent=FUN_000016-T1;
113 sample4 funannotate exon 2258 3224 . + . ID=FUN_000016-T1.exon2;Parent=FUN_000016-T1;
114 sample4 funannotate exon 3284 3537 . + . ID=FUN_000016-T1.exon3;Parent=FUN_000016-T1;
115 sample4 funannotate CDS 2126 2199 . + 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
116 sample4 funannotate CDS 2258 3224 . + 1 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
117 sample4 funannotate CDS 3284 3537 . + 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;