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annotate test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains @ 2:8bcc13094767 draft

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author iuc
date Sat, 18 Jan 2014 07:21:33 -0500
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1 Program Args: -T UnifiedGenotyper
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2 GenomeAnalysisEngine - Strictness is SILENT
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3 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
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4 TraversalEngine - Location processed.sites runtime per.1M.sites completed total.runtime remaining
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5 UnifiedGenotyper - Visited bases 5387
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6 UnifiedGenotyper - Callable bases 5344
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7 UnifiedGenotyper - Confidently called bases 5344
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8 UnifiedGenotyper - % callable bases of all loci 99.202
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9 UnifiedGenotyper - % confidently called bases of all loci 99.202
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10 UnifiedGenotyper - % confidently called bases of callable loci 100.000
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11 UnifiedGenotyper - Actual calls made 1
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12 TraversalEngine - Total runtime