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diff test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.log.contains @ 0:340633249b3d draft

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author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.log.contains	Mon Dec 02 06:18:36 2013 -0500
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+GenomeAnalysisEngine - Strictness is SILENT
+CountCovariatesWalker - The covariates being used here:
+CountCovariatesWalker - 	ReadGroupCovariate
+CountCovariatesWalker - 	QualityScoreCovariate
+CountCovariatesWalker - 	CycleCovariate
+CountCovariatesWalker - 	DinucCovariate
+CountCovariatesWalker - 	HomopolymerCovariate
+CountCovariatesWalker - 	MinimumNQSCovariate
+CountCovariatesWalker - 	PositionCovariate
+TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] 
+CountCovariatesWalker - Writing raw recalibration data...
+CountCovariatesWalker - ...done!
+TraversalEngine - Total runtime