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view test-data/gatk/gatk_print_reads/gatk_print_reads_out_1.log.contains @ 0:340633249b3d draft

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author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
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SAMDataSource$SAMReaders - Initializing SAMRecords in serial
TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
TraversalEngine -        Location processed.reads  runtime per.1M.reads completed total.runtime remaining 
Walker - [REDUCE RESULT] Traversal result is: org.broadinstitute.sting.gatk.io.stubs.SAMFileWriterStub
TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%)