Mercurial > repos > iuc > gemini_dump

diff gemini_dump.xml @ 4:96a2d270bf0f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:58:00 -0500
parents a32c298053e4
children
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--- a/gemini_dump.xml	Wed Oct 17 13:31:10 2018 -0400
+++ b/gemini_dump.xml	Fri Dec 14 12:58:00 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Extract data from the Gemini DB</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -34,10 +34,14 @@
     </outputs>
     <tests>
         <test>
-            <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" />
+            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
             <param name="header" value="True" />
             <param name="report" value="--genotypes" />
-            <output name="outfile" file="gemini_dump_result.tabular" />
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="chrom&#009;start&#009;end&#009;.*sample&#009;.*genotype.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[