Mercurial > repos > iuc > gemini_qc

comparison gemini_qc.xml @ 4:246ad1a7ff20 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:42:37 -0500
parents a875f940d8fd
children 8414eecc3828
comparison
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3:9e83673fa6d2 4:246ad1a7ff20
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Quality control tool</description> 2 <description>Quality control tool</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">qc</token> 5 <token name="@BINARY@">qc</token>
6 </macros> 6 </macros>
25 <outputs> 25 <outputs>
26 <data name="outfile" format="tabular" /> 26 <data name="outfile" format="tabular" />
27 </outputs> 27 </outputs>
28 <tests> 28 <tests>
29 <test> 29 <test>
30 <param name="infile" value="gemini_amend_input.db" ftype="gemini.sqlite" /> 30 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
31 <param name="chrom" value="chrX" ftype="gemini.sqlite" /> 31 <!-- Testing needs to be done on a chromsome that exists
32 <output name="outfile" file="gemini_qc_result.tabular" /> 32 in the test database even if that has little biological meaning
33 -->
34 <param name="chrom" value="chr1" ftype="gemini.sqlite" />
35 <output name="outfile">
36 <assert_contents>
37 <has_line_matching expression="sample&#009;sex&#009;.*" />
38 </assert_contents>
39 </output>
33 </test> 40 </test>
34 </tests> 41 </tests>
35 <help> 42 <help>
36 <![CDATA[ 43 <![CDATA[
37 **What it does** 44 **What it does**