Mercurial > repos > iuc > gemini_qc
diff gemini_qc.xml @ 4:246ad1a7ff20 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author | iuc |
---|---|
date | Fri, 14 Dec 2018 12:42:37 -0500 |
parents | a875f940d8fd |
children | 8414eecc3828 |
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--- a/gemini_qc.xml Wed Oct 17 13:30:32 2018 -0400 +++ b/gemini_qc.xml Fri Dec 14 12:42:37 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> +<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> <description>Quality control tool</description> <macros> <import>gemini_macros.xml</import> @@ -27,9 +27,16 @@ </outputs> <tests> <test> - <param name="infile" value="gemini_amend_input.db" ftype="gemini.sqlite" /> - <param name="chrom" value="chrX" ftype="gemini.sqlite" /> - <output name="outfile" file="gemini_qc_result.tabular" /> + <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" /> + <!-- Testing needs to be done on a chromsome that exists + in the test database even if that has little biological meaning + --> + <param name="chrom" value="chr1" ftype="gemini.sqlite" /> + <output name="outfile"> + <assert_contents> + <has_line_matching expression="sample	sex	.*" /> + </assert_contents> + </output> </test> </tests> <help>