Mercurial > repos > iuc > gemini_query

comparison gemini_query.xml @ 3:666f60a9331a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 1f7418d74c6fcd61a050106ca5f9b66ab9a4c33d
author iuc
date Wed, 17 Oct 2018 13:30:51 -0400
parents ab195e756e5e
children 7ca6716748c2
comparison
equal deleted inserted replaced
2:18f459744a97 3:666f60a9331a
11 <![CDATA[ 11 <![CDATA[
12 gemini @BINARY@ 12 gemini @BINARY@
13 13
14 --in "${in}" 14 --in "${in}"
15 15
16 #if $gt_filter.strip(): 16 #set $multiline_sql_expr = $gt_filter
17 --gt-filter "${gt_filter}" 17 #set $cmdln_param = "--gt-filter"
18 #end if 18 @MULTILN_SQL_EXPR_TO_CMDLN@
19 19
20 #if $sample_filter.strip(): 20 #set $multiline_sql_expr = $sample_filter
21 --sample-filter "${sample_filter}" 21 #set $cmdln_param = "--sample-filter"
22 #end if 22 @MULTILN_SQL_EXPR_TO_CMDLN@
23 23
24 $show_samples 24 $show_samples
25 $show_families 25 $show_families
26 $family_wise 26 $family_wise
27 $header 27 $header
33 --min-kindreds $min_kindreds 33 --min-kindreds $min_kindreds
34 #end if 34 #end if
35 ##--format FORMAT Format of output (JSON, TPED or default) # we will take default for the time being 35 ##--format FORMAT Format of output (JSON, TPED or default) # we will take default for the time being
36 ## --sample-delim STRING The delimiter to be used with the --show-samples option. 36 ## --sample-delim STRING The delimiter to be used with the --show-samples option.
37 37
38 #if $q.strip(): 38 #set $multiline_sql_expr = $q
39 -q "${q}" 39 #set $cmdln_param = "-q"
40 #end if 40 @MULTILN_SQL_EXPR_TO_CMDLN@
41 41
42 "${ infile }" 42 "${ infile }"
43 > "${ outfile }" 43 > "${ outfile }"
44 ]]> 44 ]]>
45 </command> 45 </command>