Mercurial > repos > iuc > gemini_query

diff gemini_query.xml @ 3:666f60a9331a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 1f7418d74c6fcd61a050106ca5f9b66ab9a4c33d
author iuc
date Wed, 17 Oct 2018 13:30:51 -0400
parents ab195e756e5e
children 7ca6716748c2
line wrap: on
line diff
--- a/gemini_query.xml	Thu Nov 09 13:17:45 2017 -0500
+++ b/gemini_query.xml	Wed Oct 17 13:30:51 2018 -0400
@@ -13,13 +13,13 @@
 
             --in "${in}"
 
-            #if $gt_filter.strip():
-                --gt-filter "${gt_filter}"
-            #end if
+            #set $multiline_sql_expr = $gt_filter
+            #set $cmdln_param = "--gt-filter"
+            @MULTILN_SQL_EXPR_TO_CMDLN@
 
-            #if $sample_filter.strip():
-                --sample-filter "${sample_filter}"
-            #end if
+            #set $multiline_sql_expr = $sample_filter
+            #set $cmdln_param = "--sample-filter"
+            @MULTILN_SQL_EXPR_TO_CMDLN@
 
             $show_samples
             $show_families
@@ -35,9 +35,9 @@
             ##--format FORMAT       Format of output (JSON, TPED or default) # we will take default for the time being
             ##   --sample-delim STRING The delimiter to be used with the --show-samples option.
 
-            #if $q.strip():
-                -q "${q}"
-            #end if
+            #set $multiline_sql_expr = $q
+            #set $cmdln_param = "-q"
+            @MULTILN_SQL_EXPR_TO_CMDLN@
 
             "${ infile }"
             > "${ outfile }"