Mercurial > repos > iuc > gemini_roh

comparison gemini_roh.xml @ 4:ce54eb6fd5f9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 13:04:54 -0500
parents 91b4db3e6df4
children d65ca2fa673b
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3:93967598e18e 4:ce54eb6fd5f9
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Identifying runs of homozygosity</description> 2 <description>Identifying runs of homozygosity</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">roh</token> 5 <token name="@BINARY@">roh</token>
6 </macros> 6 </macros>
53 <outputs> 53 <outputs>
54 <data name="outfile" format="tabular" /> 54 <data name="outfile" format="tabular" />
55 </outputs> 55 </outputs>
56 <tests> 56 <tests>
57 <test> 57 <test>
58 <param name="infile" value="gemini_burden_input.db" ftype="gemini.sqlite" /> 58 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
59 <param name="min_snps" value="3" /> 59 <param name="min_snps" value="3" />
60 <param name="min_size" value="10" /> 60 <param name="min_size" value="10" />
61 <param name="min_total_depth" value="0" /> 61 <param name="min_total_depth" value="0" />
62 <output name="outfile" file="gemini_roh_result.tabular" /> 62 <output name="outfile">
63 <assert_contents>
64 <has_line_matching expression="chrom&#009;start&#009;end&#009;.*run_length.*" />
65 </assert_contents>
66 </output>
63 </test> 67 </test>
64 </tests> 68 </tests>
65 <help><![CDATA[ 69 <help><![CDATA[
66 70
67 **What it does** 71 **What it does**