Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out3.stats @ 5:f99dd58de04f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
| author | iuc |
|---|---|
| date | Fri, 03 Feb 2023 10:57:30 +0000 |
| parents | 0f710191a66d |
| children |
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--- a/test-data/gffcompare_out3.stats Thu Oct 17 03:01:26 2019 -0400 +++ b/test-data/gffcompare_out3.stats Fri Feb 03 10:57:30 2023 +0000 @@ -1,30 +1,30 @@ -# gffcompare v0.11.2 | Command line was: -#gffcompare -r ref_annotation -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf +# gffcompare v0.12.6 | Command line was: +#gffcompare -V -r reference_annotation -R --strict-match -e 100 -T -d 100 -p TCONS gffcompare_in4_gtf # #= Summary for dataset: gffcompare_in4_gtf # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) # (3 multi-transcript loci, ~1.2 transcripts per locus) -# Reference mRNAs : 19 in 6 loci (19 multi-exon) -# Super-loci w/ reference transcripts: 6 +# Reference mRNAs : 35 in 29 loci (15 multi-exon) +# Super-loci w/ reference transcripts: 29 #-----------------| Sensitivity | Precision | - Base level: 72.7 | 60.7 | - Exon level: 81.0 | 55.7 | - Intron level: 81.2 | 64.4 | -Intron chain level: 10.5 | 13.3 | - Transcript level: 10.5 | 5.7 | - Locus level: 33.3 | 6.9 | + Base level: 100.0 | 100.0 | + Exon level: 100.0 | 100.0 | + Intron level: 100.0 | 100.0 | +Intron chain level: 100.0 | 100.0 | + Transcript level: 100.0 | 100.0 | + Locus level: 100.0 | 100.0 | - Matching intron chains: 2 - Matching transcripts: 2 - Matching loci: 2 + Matching intron chains: 15 + Matching transcripts: 35 + Matching loci: 29 - Missed exons: 2/84 ( 2.4%) - Novel exons: 46/122 ( 37.7%) - Missed introns: 11/69 ( 15.9%) - Novel introns: 28/87 ( 32.2%) - Missed loci: 0/6 ( 0.0%) - Novel loci: 15/29 ( 51.7%) + Missed exons: 0/122 ( 0.0%) + Novel exons: 0/122 ( 0.0%) + Missed introns: 0/87 ( 0.0%) + Novel introns: 0/87 ( 0.0%) + Missed loci: 0/29 ( 0.0%) + Novel loci: 0/29 ( 0.0%) - Total union super-loci across all input datasets: 21 + Total union super-loci across all input datasets: 29 35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)