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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
author iuc
date Fri, 03 Feb 2023 10:57:30 +0000
parents 0f710191a66d
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# gffcompare v0.12.6 | Command line was:
#gffcompare -V -r reference_annotation -R --strict-match -e 100 -T -d 100 -p TCONS gffcompare_in4_gtf
#

#= Summary for dataset: gffcompare_in4_gtf 
#     Query mRNAs :      35 in      29 loci  (15 multi-exon transcripts)
#            (3 multi-transcript loci, ~1.2 transcripts per locus)
# Reference mRNAs :      35 in      29 loci  (15 multi-exon)
# Super-loci w/ reference transcripts:       29
#-----------------| Sensitivity | Precision  |
        Base level:   100.0     |   100.0    |
        Exon level:   100.0     |   100.0    |
      Intron level:   100.0     |   100.0    |
Intron chain level:   100.0     |   100.0    |
  Transcript level:   100.0     |   100.0    |
       Locus level:   100.0     |   100.0    |

     Matching intron chains:      15
       Matching transcripts:      35
              Matching loci:      29

          Missed exons:       0/122	(  0.0%)
           Novel exons:       0/122	(  0.0%)
        Missed introns:       0/87	(  0.0%)
         Novel introns:       0/87	(  0.0%)
           Missed loci:       0/29	(  0.0%)
            Novel loci:       0/29	(  0.0%)

 Total union super-loci across all input datasets: 29 
35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)