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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit a5352fb7f073b0083b750c5cf7d283ebcc16b30d
author iuc
date Tue, 05 Feb 2019 15:51:44 -0500
parents 3c97c841a443
children 2bb86e2c417f
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# gffcompare v0.10.6 | Command line was:
#gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_13.dat -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf
#

#= Summary for dataset: gffcompare_in4_gtf 
#     Query mRNAs :      35 in      29 loci  (15 multi-exon transcripts)
#            (3 multi-transcript loci, ~1.2 transcripts per locus)
# Reference mRNAs :      20 in       7 loci  (19 multi-exon)
# Super-loci w/ reference transcripts:        6
#-----------------| Sensitivity | Precision  |
        Base level:    72.6     |    60.7    |
        Exon level:    80.0     |    55.7    |
      Intron level:    81.2     |    64.4    |
Intron chain level:    10.5     |    13.3    |
  Transcript level:    10.0     |     5.7    |
       Locus level:    28.6     |     6.9    |

     Matching intron chains:       2
       Matching transcripts:       2
              Matching loci:       2

          Missed exons:       3/85	(  3.5%)
           Novel exons:      46/122	( 37.7%)
        Missed introns:      11/69	( 15.9%)
         Novel introns:      28/87	( 32.2%)
           Missed loci:       0/7	(  0.0%)
            Novel loci:      15/29	( 51.7%)

 Total union super-loci across all input datasets: 21 
35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)