Mercurial > repos > iuc > ggplot2_point
changeset 10:299307abd804 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 847c77a54204433d210cd8a1234474d014628424
| author | iuc |
|---|---|
| date | Thu, 24 Nov 2022 20:23:57 +0000 |
| parents | 1acf88921176 |
| children | d0fc8b746d57 |
| files | ggplot_point.xml macros.xml test-data/ggplot_histogram_result1.pdf test-data/ggplot_pca_result1.pdf test-data/ggplot_point_result1.pdf test-data/ggplot_point_result2.pdf test-data/ggplot_point_result3.pdf test-data/ggplot_violin_result1.pdf |
| diffstat | 8 files changed, 50 insertions(+), 5 deletions(-) [+] |
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--- a/ggplot_point.xml Tue Nov 23 07:58:14 2021 +0000 +++ b/ggplot_point.xml Thu Nov 24 20:23:57 2022 +0000 @@ -38,8 +38,8 @@ gg_point = geom_point(size=1, alpha=1, gg_factor) gg_line = geom_line(size=1, alpha=1, gg_factor) #else - gg_point = geom_point(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor') - gg_line = geom_line(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor') + gg_point = geom_point(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape')) + gg_line = geom_line(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape')) #end if names(input)[$adv.factor.factorcol] <- "factor" @@ -72,8 +72,8 @@ gg_point = geom_point(size=1, alpha=1, gg_factor) gg_line = geom_line(size=1, alpha=1, gg_factor) #else - gg_point = geom_point(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor') - gg_line = geom_line(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor') + gg_point = geom_point(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape')) + gg_line = geom_line(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape')) #end if #end if @@ -220,6 +220,28 @@ <param name="additional_output_format" value="pdf" /> <output name="output2" file="ggplot_point_result2.pdf" compare="sim_size" /> </test> + <!-- Test defined point options options--> + <test> + <param name="input1" value="mtcars.txt" ftype="tabular" /> + <section name="adv"> + <conditional name="type_conditional"> + <param name="type_options" value="points"/> + <conditional name="points"> + <param name="pointoptions" value="defined"/> + <param name="size" value="2"/> + <param name="alpha" value="0.5"/> + <param name="pointcolor" value="gold"/> + <param name="shape" value="6"/> + </conditional> + </conditional> + <conditional name="axis_text_customization"> + <param name="axis_customization" value="defined"/> + <param name="color" value="red"/> + </conditional> + </section> + <param name="additional_output_format" value="pdf" /> + <output name="output2" file="ggplot_point_result3.pdf" compare="sim_size" /> + </test> </tests> <help><![CDATA[ This tool will generate a scatterplot representing data from two groups/conditions.
--- a/macros.xml Tue Nov 23 07:58:14 2021 +0000 +++ b/macros.xml Thu Nov 24 20:23:57 2022 +0000 @@ -13,7 +13,7 @@ </xrefs> </xml> <token name="@TOOL_VERSION@">3.3.5</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@R_INIT@"><![CDATA[ @@ -318,6 +318,29 @@ <option value="grey">Grey</option> <option value="gold">Gold</option> </param> + <param name="shape" type="select" label="Shape of data points" > + <option value="0">square</option> + <option value="1">circle</option> + <option value="2">triangle point up</option> + <option value="3">plus</option> + <option value="4">cross</option> + <option value="5">diamond</option> + <option value="6">triangle point down</option> + <option value="7">square cross</option> + <option value="8">star</option> + <option value="9">diamond plus</option> + <option value="10">circle plus</option> + <option value="11">triangles up and down</option> + <option value="12">square plus</option> + <option value="13">circle cross</option> + <option value="14">square and triangle down</option> + <option value="15">filled square</option> + <option value="16">filled circle</option> + <option value="17">filled triangle point-up</option> + <option value="18">filled diamond</option> + <option value="19">solid circle</option> + <option value="20">bullet (smaller circle)</option> + </param> </when> </conditional> </xml>