Mercurial > repos > iuc > ggplot2_violin

changeset 11:17b666467c32 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 6737c924917eea8c009c30d7f9917d5a341b9948
author iuc
date Mon, 30 Sep 2024 15:40:28 +0000
parents 0e7290688b50
children
files ggplot_violin.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/ggplot_violin.xml	Fri Dec 09 22:40:55 2022 +0000
+++ b/ggplot_violin.xml	Mon Sep 30 15:40:28 2024 +0000
@@ -1,8 +1,8 @@
 <tool id="ggplot2_violin" name="Violin plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements">
         <requirement type="package" version="1.4.4">r-reshape2</requirement>
         <requirement type="package" version="2.1.0">r-svglite</requirement>
@@ -89,17 +89,6 @@
                 <option value="gold">Gold</option>
             </param>
             <expand macro="transform" />
-            <conditional name="scaling">
-                <param name="plot_scaling" type="select" label="Axis scaling">
-                    <option value="Automatic" selected="true">Automatic axis scaling</option>
-                    <option value="Defined">User deined axis scales</option>
-                </param>
-                <when value="Automatic" />
-                <when value="Defined">
-                    <param name="yaxismin" type="integer" value="0" label="minimal range of y-axis" />
-                    <param name="yaxismax" type="integer" value="3" label="maximal range of y-axis" />
-                </when>
-            </conditional>
             <expand macro="xy_scaling" />
             <expand macro="theme" />
             <expand macro="legend" />
@@ -112,10 +101,10 @@
         <expand macro="additional_output" />
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="input1" value="mtcars.txt" ftype="tabular"/>
             <param name="additional_output_format" value="pdf" />
-            <output name="output2" file="ggplot_violin_result1.pdf" compare="sim_size"/>
+            <output name="output2" file="ggplot_violin_result1.pdf" ftype="pdf" compare="sim_size"/>
         </test>
     </tests>
     <help><![CDATA[
--- a/macros.xml	Fri Dec 09 22:40:55 2022 +0000
+++ b/macros.xml	Mon Sep 30 15:40:28 2024 +0000
@@ -13,7 +13,7 @@
         </xrefs>
     </xml>
     <token name="@TOOL_VERSION@">3.4.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
 
     <token name="@R_INIT@"><![CDATA[
         ## Setup R error handling to go to stderr