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annotate test-data/go.obo @ 1:de3e053bd6a5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit 2983eca17b9a004685024b6f4554a5190d63c7fd
author iuc
date Wed, 24 Jul 2019 05:37:26 -0400
parents 294de027cb5d
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294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
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1 format-version: 1.2
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2 data-version: releases/2018-04-30
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3 subsetdef: goantislim_grouping "Grouping classes that can be excluded"
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4 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
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5 subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
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6 subsetdef: goslim_agr "AGR slim"
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7 subsetdef: goslim_aspergillus "Aspergillus GO slim"
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8 subsetdef: goslim_candida "Candida GO slim"
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9 subsetdef: goslim_chembl "ChEMBL protein targets summary"
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10 subsetdef: goslim_generic "Generic GO slim"
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11 subsetdef: goslim_goa "GOA and proteome slim"
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12 subsetdef: goslim_metagenomics "Metagenomics GO slim"
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13 subsetdef: goslim_mouse "Mouse GO slim"
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14 subsetdef: goslim_pir "PIR GO slim"
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15 subsetdef: goslim_plant "Plant GO slim"
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16 subsetdef: goslim_pombe "Fission yeast GO slim"
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17 subsetdef: goslim_synapse "synapse GO slim"
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18 subsetdef: goslim_virus "Viral GO slim"
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19 subsetdef: goslim_yeast "Yeast GO slim"
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20 subsetdef: gosubset_prok "Prokaryotic GO subset"
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21 subsetdef: mf_needs_review "Catalytic activity terms in need of attention"
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22 subsetdef: termgenie_unvetted "Terms created by TermGenie that do not follow a template and require additional vetting by editors"
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23 subsetdef: virus_checked "Viral overhaul terms"
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24 synonymtypedef: syngo_official_label "label approved by the SynGO project"
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25 synonymtypedef: systematic_synonym "Systematic synonym" EXACT
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26 default-namespace: gene_ontology
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27 remark: cvs version: $Revision: 38972$
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28 remark: Includes Ontology(OntologyID(Anonymous-35)) [Axioms: 230 Logical Axioms: 228]
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29 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/never_in_taxon.owl>))) [Axioms: 18 Logical Axioms: 0]
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30 ontology: go
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31 property_value: http://purl.org/dc/elements/1.1/license http://creativecommons.org/licenses/by/4.0/
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32
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33 [Term]
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34 id: GO:0000003
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35 name: reproduction
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36 namespace: biological_process
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37 alt_id: GO:0019952
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38 alt_id: GO:0050876
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39 def: "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms." [GOC:go_curators, GOC:isa_complete, GOC:jl, ISBN:0198506732]
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40 subset: goslim_agr
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41 subset: goslim_chembl
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42 subset: goslim_generic
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43 subset: goslim_pir
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44 subset: goslim_plant
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45 subset: gosubset_prok
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46 synonym: "reproductive physiological process" EXACT []
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47 xref: Wikipedia:Reproduction
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48 is_a: GO:0008150 ! biological_process
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49 disjoint_from: GO:0044848 ! biological phase
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50
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51 [Term]
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52 id: GO:0001906
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53 name: cell killing
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54 namespace: biological_process
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55 def: "Any process in an organism that results in the killing of its own cells or those of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." [GOC:add]
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56 subset: goslim_pir
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57 subset: gosubset_prok
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58 synonym: "necrosis" RELATED []
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59 is_a: GO:0008150 ! biological_process
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60 disjoint_from: GO:0044848 ! biological phase
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61
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62 [Term]
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63 id: GO:0002376
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64 name: immune system process
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65 namespace: biological_process
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66 def: "Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
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67 comment: Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). This term was added by GO_REF:0000022.
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68 subset: goslim_agr
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69 subset: goslim_chembl
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70 subset: goslim_generic
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71 subset: goslim_mouse
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72 subset: goslim_pir
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73 xref: Wikipedia:Immune_system
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74 is_a: GO:0008150 ! biological_process
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75 disjoint_from: GO:0044848 ! biological phase
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76
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77 [Term]
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78 id: GO:0003674
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79 name: molecular_function
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80 namespace: molecular_function
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81 alt_id: GO:0005554
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82 def: "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt]
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83 comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
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84 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
85 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
86 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
87 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
88 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
89 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
90 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
91 subset: goslim_yeast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
92 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
93 synonym: "molecular function" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
94
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
95 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
96 id: GO:0003824
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
97 name: catalytic activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
98 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
99 def: "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." [GOC:vw, ISBN:0198506732]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
100 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
101 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
102 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
103 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
104 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
105 synonym: "enzyme activity" EXACT [GOC:dph, GOC:tb]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
106 xref: Wikipedia:Enzyme
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
107 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
108
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
109 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
110 id: GO:0005198
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
111 name: structural molecule activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
112 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
113 def: "The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell." [GOC:mah, GOC:vw]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
114 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
115 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
116 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
117 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
118 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
119 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
120 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
121 subset: goslim_yeast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
122 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
123 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
124
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
125 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
126 id: GO:0005215
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
127 name: transporter activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
128 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
129 alt_id: GO:0005478
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
130 def: "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." [GOC:ai, GOC:dgf]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
131 comment: Some transporters, such as certain members of the SLC family, are referred to as 'carriers'; however GO uses carrier with a different meaning: a carrier binds to and transports the substance (see GO:0140104 molecular carrier activity), whereas a transporter forms some pore that allows the passing of molecules.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
132 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
133 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
134 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
135 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
136 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
137 subset: goslim_mouse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
138 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
139 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
140 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
141 synonym: "carrier" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
142 xref: Reactome:REACT_6315 "Virion-associated M2 protein mediated ion infusion, Homo sapiens"
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
143 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
144
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
145 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
146 id: GO:0005488
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
147 name: binding
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
148 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
149 def: "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
150 comment: Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
151 subset: gocheck_do_not_manually_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
152 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
153 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
154 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
155 synonym: "ligand" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
156 xref: Wikipedia:Binding_(molecular)
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
157 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
158
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
159 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
160 id: GO:0005575
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
161 name: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
162 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
163 alt_id: GO:0008372
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
164 def: "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." [GOC:pdt, NIF_Subcellular:sao-1337158144]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
165 comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
166 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
167 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
168 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
169 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
170 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
171 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
172 subset: goslim_plant
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iuc
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173 subset: goslim_yeast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
174 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
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175 synonym: "cell or subcellular entity" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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176 synonym: "cellular component" EXACT []
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iuc
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177 synonym: "subcellular entity" RELATED [NIF_Subcellular:nlx_subcell_100315]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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178 xref: NIF_Subcellular:sao-1337158144
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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179 xref: NIF_Subcellular:sao1337158144
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iuc
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180
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iuc
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diff changeset
181 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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182 id: GO:0005576
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183 name: extracellular region
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184 namespace: cellular_component
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185 def: "The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite." [GOC:go_curators]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
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186 comment: Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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187 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
188 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
189 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
190 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
191 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
192 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
193 subset: goslim_mouse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
194 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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195 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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196 subset: goslim_yeast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
197 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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198 synonym: "extracellular" EXACT []
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iuc
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199 xref: Wikipedia:Extracellular
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200 is_a: GO:0005575 ! cellular_component
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201
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iuc
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diff changeset
202 [Term]
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iuc
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203 id: GO:0005623
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204 name: cell
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iuc
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205 namespace: cellular_component
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206 def: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope." [GOC:go_curators]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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207 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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208 subset: goslim_generic
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iuc
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209 subset: goslim_plant
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iuc
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210 subset: gosubset_prok
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211 xref: NIF_Subcellular:sao1813327414
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212 xref: Wikipedia:Cell_(biology)
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iuc
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213 is_a: GO:0005575 ! cellular_component
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214 property_value: IAO:0000589 "cell and encapsulating structures" xsd:string
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215
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216 [Term]
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217 id: GO:0006791
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218 name: sulfur utilization
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219 namespace: biological_process
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220 def: "A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary sulfur sources and then activates genes to scavenge the last traces of the primary sulfur source and to transport and metabolize alternate sulfur sources. The utilization process begins when the cell or organism detects sulfur levels, includes the activation of genes whose products detect, transport or metabolize sulfur-containing compounds, and ends when the sulfur is incorporated into the cell or organism's metabolism." [GOC:mah, GOC:mlg]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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221 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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222 synonym: "sulphur utilization" EXACT []
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iuc
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223 is_a: GO:0008150 ! biological_process
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224
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225 [Term]
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iuc
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226 id: GO:0006794
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227 name: phosphorus utilization
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228 namespace: biological_process
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229 def: "A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary phosphorus source and then activates genes to scavenge the last traces of the primary phosphorus source and to transport and metabolize alternative phosphorus sources. The utilization process begins when the cell or organism detects phosphorus levels, includes the phosphorus-containing substances, and ends when phosphorus is incorporated into the cell or organism's metabolism." [GOC:mah, GOC:mlg]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
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230 subset: gosubset_prok
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231 is_a: GO:0008150 ! biological_process
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232
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233 [Term]
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234 id: GO:0007610
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235 name: behavior
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236 namespace: biological_process
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237 alt_id: GO:0044708
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238 def: "The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity." [GOC:ems, GOC:jl, ISBN:0395448956, PMID:20160973]
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239 comment: 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.\n2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis).
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240 subset: gocheck_do_not_manually_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
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241 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
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242 subset: goslim_plant
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243 subset: gosubset_prok
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244 synonym: "behavioral response to stimulus" EXACT []
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245 synonym: "behaviour" EXACT []
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246 synonym: "behavioural response to stimulus" EXACT []
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247 synonym: "single-organism behavior" RELATED []
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248 xref: Wikipedia:Behavior
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249 is_a: GO:0008150 ! biological_process
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250 disjoint_from: GO:0032502 ! developmental process
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251 created_by: janelomax
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252 creation_date: 2012-09-20T14:06:08Z
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253
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254 [Term]
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255 id: GO:0008150
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256 name: biological_process
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257 namespace: biological_process
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258 alt_id: GO:0000004
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259 alt_id: GO:0007582
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iuc
parents:
diff changeset
260 alt_id: GO:0044699
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
261 def: "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
262 comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
263 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
264 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
265 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
266 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
267 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
268 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
269 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
270 subset: goslim_pombe
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
271 subset: goslim_yeast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
272 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
273 synonym: "biological process" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
274 synonym: "physiological process" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
275 synonym: "single organism process" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
276 synonym: "single-organism process" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
277 xref: Wikipedia:Biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
278 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
279 creation_date: 2012-09-19T15:05:24Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
280
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
281 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
282 id: GO:0008152
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
283 name: metabolic process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
284 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
285 alt_id: GO:0044236
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
286 alt_id: GO:0044710
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
287 def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
288 comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
289 subset: gocheck_do_not_manually_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
290 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
291 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
292 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
293 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
294 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
295 synonym: "metabolic process resulting in cell growth" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
296 synonym: "metabolism" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
297 synonym: "metabolism resulting in cell growth" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
298 synonym: "multicellular organism metabolic process" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
299 synonym: "single-organism metabolic process" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
300 xref: Wikipedia:Metabolism
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
301 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
302 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
303 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
304 creation_date: 2012-10-17T15:46:40Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
305
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
306 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
307 id: GO:0008283
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
308 name: cell proliferation
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
309 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
310 def: "The multiplication or reproduction of cells, resulting in the expansion of a cell population." [GOC:mah, GOC:mb]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
311 comment: This term was moved out from being a child of 'cellular process' because it is a cell population-level process, and cellular processes are restricted to those processes that involve individual cells. Also note that this term is intended to be used for the proliferation of cells within a multicellular organism, not for the expansion of a population of single-celled organisms.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
312 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
313 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
314 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
315 subset: goslim_mouse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
316 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
317 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
318 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
319
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
320 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
321 id: GO:0009295
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
322 name: nucleoid
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
323 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
324 def: "The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined." [GOC:bm, GOC:ma, ISBN:3540076689]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
325 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
326 xref: Wikipedia:Nucleoid
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
327 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
328
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
329 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
330 id: GO:0009758
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
331 name: carbohydrate utilization
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
332 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
333 alt_id: GO:0007587
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
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diff changeset
334 def: "A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbohydrate sources,usually glucose, and then activates genes to scavenge the last traces of the primary carbohydrate source and to transport and metabolize alternate carbohydrate sources. The utilization process begins when the cell or organism detects carbohydrate levels, includes the activation of genes whose products detect, transport or metabolize carbohydrates, and ends when the carbohydrate is incorporated into the cell or organism's metabolism." [GOC:mah, GOC:mcc2, GOC:mlg]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
335 synonym: "sugar utilization" NARROW [GOC:mcc2]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
336 is_a: GO:0008150 ! biological_process
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iuc
parents:
diff changeset
337
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
338 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
339 id: GO:0009987
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iuc
parents:
diff changeset
340 name: cellular process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
341 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
342 alt_id: GO:0008151
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
343 alt_id: GO:0044763
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
344 alt_id: GO:0050875
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
345 def: "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
346 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
347 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
348 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
349 synonym: "cell growth and/or maintenance" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
350 synonym: "cell physiology" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
351 synonym: "cellular physiological process" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
352 synonym: "single-organism cellular process" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
353 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
354 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
355 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
356 creation_date: 2012-12-11T16:56:55Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
357
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
358 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
359 id: GO:0015976
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
360 name: carbon utilization
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
361 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
362 alt_id: GO:0015978
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
363 def: "A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism." [GOC:mah, GOC:mlg]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
364 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
365 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
366 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
367 synonym: "carbon utilization by utilization of organic compounds" EXACT [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
368 synonym: "heterotrophy" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
369 xref: Wikipedia:Heterotroph
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
370 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
371
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
372 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
373 id: GO:0016020
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
374 name: membrane
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
375 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
376 def: "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." [GOC:dos, GOC:mah, ISBN:0815316194]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
377 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
378 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
379 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
380 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
381 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
382 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
383 subset: goslim_yeast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
384 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
385 xref: Wikipedia:Biological_membrane
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
386 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
387
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
388 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
389 id: GO:0016209
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
390 name: antioxidant activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
391 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
392 def: "Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage." [ISBN:0198506732]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
393 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
394 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
395 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
396 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
397
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
398 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
399 id: GO:0019012
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
400 name: virion
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
401 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
402 def: "The complete fully infectious extracellular virus particle." [ISBN:0781718325]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
403 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
404 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
405 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
406 synonym: "complete virus particle" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
407 xref: Wikipedia:Virus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
408 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
409
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
410 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
411 id: GO:0019740
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
412 name: nitrogen utilization
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
413 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
414 def: "A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary nitrogen source, usually ammonia, and then activates genes to scavenge the last traces of the primary nitrogen source and to transport and metabolize alternative nitrogen sources. The utilization process begins when the cell or organism detects nitrogen levels, includes the activation of genes whose products detect, transport or metabolize nitrogen-containing substances, and ends when nitrogen is incorporated into the cell or organism's metabolism." [GOC:mah, GOC:mlg]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
415 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
416 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
417
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
418 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
419 id: GO:0022414
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
420 name: reproductive process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
421 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
422 alt_id: GO:0044702
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
423 def: "A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents." [GOC:dph, GOC:isa_complete]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
424 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
425 synonym: "single organism reproductive process" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
426 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
427 intersection_of: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
428 intersection_of: part_of GO:0000003 ! reproduction
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
429 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
430 relationship: part_of GO:0000003 ! reproduction
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
431 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
432 creation_date: 2012-09-19T15:56:06Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
433
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
434 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
435 id: GO:0022610
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
436 name: biological adhesion
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
437 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
438 def: "The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions." [GOC:isa_complete]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
439 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
440 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
441 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
442 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
443
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
444 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
445 id: GO:0023052
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
446 name: signaling
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
447 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
448 alt_id: GO:0023046
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
449 alt_id: GO:0044700
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
450 def: "The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered." [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
451 comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
452 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
453 subset: goslim_mouse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
454 subset: goslim_pombe
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
455 subset: goslim_yeast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
456 synonym: "biological signaling" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
457 synonym: "signaling process" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
458 synonym: "signalling" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
459 synonym: "signalling process" RELATED [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
460 synonym: "single organism signaling" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
461 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
462 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
463 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
464 creation_date: 2010-02-16T09:30:50Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
465
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
466 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
467 id: GO:0030054
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
468 name: cell junction
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
469 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
470 def: "A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix." [GOC:mah, http://www.vivo.colostate.edu/hbooks/cmb/cells/pmemb/junctions_a.html, ISBN:0198506732]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
471 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
472 xref: Wikipedia:Cell_junction
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
473 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
474
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
475 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
476 id: GO:0031386
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
477 name: protein tag
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
478 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
479 def: "A molecular function exhibited by a protein that is covalently attached (AKA tagged or conjugated) to another protein where it acts as a marker, recognized by the cellular apparatus to target the tagged protein for some cellular process such as modification, sequestration, transport or degradation." [GOC:dos, GOC:go_curators, PMID:19028679, PMID:20054389, PMID:6305978]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
480 comment: Use this term to annotate conjugated tags, not for conjugating enzymes. At the time of writing, all known gene products with this activity are ubiquitin-like, either based on overall sequence similarity or the presence of common motifs and structures.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
481 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
482 synonym: "covalent modifier" RELATED [GOC:vw]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
483 synonym: "protein tagging activity" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
484 synonym: "ubiquitin" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
485 synonym: "ubiquitin-like protein modifier" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
486 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
487
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
488 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
489 id: GO:0031974
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
490 name: membrane-enclosed lumen
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
491 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
492 def: "The enclosed volume within a sealed membrane or between two sealed membranes. Encompasses the volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear envelope lumen." [GOC:add, GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
493 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
494
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
495 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
496 id: GO:0032501
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
497 name: multicellular organismal process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
498 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
499 alt_id: GO:0044707
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
500 alt_id: GO:0050874
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
501 def: "Any biological process, occurring at the level of a multicellular organism, pertinent to its function." [GOC:curators, GOC:dph, GOC:isa_complete, GOC:tb]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
502 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
503 synonym: "organismal physiological process" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
504 synonym: "single-multicellular organism process" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
505 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
506 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
507 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
508 creation_date: 2012-09-19T16:07:47Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
509
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
510 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
511 id: GO:0032502
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
512 name: developmental process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
513 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
514 alt_id: GO:0044767
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
515 def: "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." [GOC:isa_complete]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
516 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
517 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
518 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
519 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
520 synonym: "development" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
521 synonym: "single-organism developmental process" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
522 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
523 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
524 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
525 creation_date: 2012-12-19T12:21:31Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
526
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
527 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
528 id: GO:0032991
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
529 name: protein-containing complex
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
530 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
531 alt_id: GO:0043234
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
532 def: "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." [GOC:dos, GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
533 comment: A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
534 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
535 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
536 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
537 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
538 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
539 synonym: "macromolecular complex" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
540 synonym: "macromolecule complex" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
541 synonym: "protein complex" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
542 synonym: "protein containing complex" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
543 synonym: "protein-protein complex" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
544 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
545
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
546 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
547 id: GO:0038024
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
548 name: cargo receptor activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
549 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
550 def: "Combining selectively with an extracellular substance and delivering the substance into the cell via endocytosis." [GOC:bf, GOC:signaling, PMID:15239958]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
551 comment: Note that this term and its child terms are intended for receptors that bind to and internalize molecules by receptor-mediated endocytosis. For receptors that are coupled to a signal transduction pathway, consider instead the term 'signaling receptor activity ; GO:0038023' and its children.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
552 synonym: "endocytic receptor activity" EXACT [GOC:signaling, ISBN:0123645387, PMID:12671190]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
553 synonym: "receptor activity" BROAD []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
554 synonym: "receptor activity involved in ligand uptake" EXACT [PMID:12671190]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
555 synonym: "receptor activity involved in receptor-mediated endocytosis" EXACT [GOC:bf]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
556 synonym: "transport receptor activity" BROAD [GOC:signaling]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
557 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
558 created_by: rfoulger
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
559 creation_date: 2011-08-01T02:50:45Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
560
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
561 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
562 id: GO:0040007
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
563 name: growth
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
564 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
565 alt_id: GO:0048590
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
566 def: "The increase in size or mass of an entire organism, a part of an organism or a cell." [GOC:bf, GOC:ma]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
567 comment: See also the biological process term 'cell growth ; GO:0016049'.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
568 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
569 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
570 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
571 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
572 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
573 synonym: "growth pattern" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
574 synonym: "non-developmental growth" RELATED [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
575 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
576 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
577
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
578 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
579 id: GO:0040011
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
580 name: locomotion
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
581 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
582 def: "Self-propelled movement of a cell or organism from one location to another." [GOC:dgh]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
583 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
584 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
585 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
586 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
587 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
588 disjoint_from: GO:0044848 ! biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
589
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
590 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
591 id: GO:0043226
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
592 name: organelle
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
593 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
594 def: "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." [GOC:go_curators]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
595 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
596 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
597 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
598 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
599 xref: NIF_Subcellular:sao1539965131
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
600 xref: Wikipedia:Organelle
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
601 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
602
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
603 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
604 id: GO:0043473
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
605 name: pigmentation
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
606 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
607 def: "The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
608 subset: goslim_chembl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
609 subset: goslim_generic
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
610 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
611 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
612 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
613
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
614 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
615 id: GO:0044215
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
616 name: other organism
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
617 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
618 def: "A secondary organism with which the first organism is interacting." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
619 comment: We plan to obsolete this branch of GO and replace its usage in annotation with a system for multi-organism annotation.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
620 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
621 created_by: jane
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
622 creation_date: 2009-11-12T01:04:58Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
623
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
624 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
625 id: GO:0044217
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
626 name: other organism part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
627 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
628 def: "Any constituent part of a secondary organism with which the first organism is interacting." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
629 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
630 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
631 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
632 intersection_of: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
633 intersection_of: part_of GO:0044215 ! other organism
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
634 relationship: part_of GO:0044215 ! other organism
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
635 created_by: jane
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
636 creation_date: 2009-11-12T01:18:21Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
637
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
638 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
639 id: GO:0044421
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
640 name: extracellular region part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
641 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
642 def: "Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
643 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
644 subset: goantislim_grouping
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
645 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
646 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
647 synonym: "extracellular structure" RELATED [NIF_Subcellular:sao9117790637]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
648 xref: NIF_Subcellular:sao9117790637
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
649 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
650 intersection_of: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
651 intersection_of: part_of GO:0005576 ! extracellular region
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
652 relationship: part_of GO:0005576 ! extracellular region
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
653
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
654 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
655 id: GO:0044422
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
656 name: organelle part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
657 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
658 def: "Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
659 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
660 subset: goantislim_grouping
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
661 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
662 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
663 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
664 intersection_of: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
665 intersection_of: part_of GO:0043226 ! organelle
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
666 relationship: part_of GO:0043226 ! organelle
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
667
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
668 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
669 id: GO:0044423
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
670 name: virion part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
671 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
672 def: "Any constituent part of a virion, a complete fully infectious extracellular virus particle." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
673 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
674 subset: goantislim_grouping
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
675 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
676 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
677 intersection_of: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
678 intersection_of: part_of GO:0019012 ! virion
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
679 relationship: part_of GO:0019012 ! virion
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
680
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
681 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
682 id: GO:0044425
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
683 name: membrane part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
684 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
685 def: "Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
686 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
687 subset: goantislim_grouping
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
688 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
689 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
690 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
691 intersection_of: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
692 intersection_of: part_of GO:0016020 ! membrane
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
693 relationship: part_of GO:0016020 ! membrane
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
694
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
695 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
696 id: GO:0044456
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
697 name: synapse part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
698 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
699 def: "Any constituent part of a synapse, the junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
700 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
701 subset: goantislim_grouping
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
702 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
703 synonym: "synaptic component" RELATED [NIF_Subcellular:sao1784069613]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
704 xref: NIF_Subcellular:sao1784069613
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
705 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
706 intersection_of: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
707 intersection_of: part_of GO:0045202 ! synapse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
708 relationship: part_of GO:0045202 ! synapse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
709
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
710 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
711 id: GO:0044464
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
712 name: cell part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
713 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
714 def: "Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
715 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
716 subset: goantislim_grouping
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
717 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
718 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
719 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
720 synonym: "cellular subcomponent" EXACT [NIF_Subcellular:sao628508602]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
721 synonym: "protoplast" RELATED [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
722 xref: NIF_Subcellular:sao628508602
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
723 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
724 intersection_of: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
725 intersection_of: part_of GO:0005623 ! cell
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
726 relationship: part_of GO:0005623 ! cell
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
727
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
728 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
729 id: GO:0044848
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
730 name: biological phase
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
731 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
732 def: "A distinct period or stage in a biological process or cycle." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
733 comment: Note that phases are is_a disjoint from other biological processes. happens_during relationships can operate between phases and other biological processes e.g. DNA replication happens_during S phase.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
734 subset: gocheck_do_not_manually_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
735 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
736 disjoint_from: GO:0048511 ! rhythmic process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
737 disjoint_from: GO:0050896 ! response to stimulus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
738 disjoint_from: GO:0051179 ! localization
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
739 disjoint_from: GO:0051704 ! multi-organism process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
740 disjoint_from: GO:0071840 ! cellular component organization or biogenesis
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
741 disjoint_from: GO:0098743 ! cell aggregation
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
742 created_by: janelomax
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
743 creation_date: 2014-07-16T13:12:40Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
744
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
745 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
746 id: GO:0045182
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
747 name: translation regulator activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
748 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
749 def: "Any molecular function involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome." [GOC:ai]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
750 subset: goslim_aspergillus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
751 subset: goslim_candida
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
752 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
753 subset: goslim_plant
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
754 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
755 synonym: "translation factor activity" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
756 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
757
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
758 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
759 id: GO:0045202
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
760 name: synapse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
761 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
762 def: "The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane." [ISBN:0198506732]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
763 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
764 subset: goslim_mouse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
765 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
766 subset: goslim_synapse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
767 synonym: "electrotonic synapse" RELATED [NIF_Subcellular:sao1311109124]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
768 synonym: "mixed synapse" NARROW [NIF_Subcellular:sao1506103497]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
769 synonym: "synaptic junction" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
770 xref: NIF_Subcellular:sao914572699
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
771 xref: Wikipedia:Chemical_synapse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
772 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
773
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
774 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
775 id: GO:0045735
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
776 name: nutrient reservoir activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
777 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
778 def: "Functions in the storage of nutritious substrates." [GOC:ai]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
779 comment: Note that this term can be used in place of the obsolete terms 'storage protein ; GO:0005187' and 'storage protein of fat body (sensu Insecta) ; GO:0008041'.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
780 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
781 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
782 synonym: "storage protein" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
783 synonym: "storage protein of fat body" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
784 synonym: "yolk protein" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
785 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
786
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
787 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
788 id: GO:0048511
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
789 name: rhythmic process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
790 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
791 def: "Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism." [GOC:jid]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
792 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
793 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
794 synonym: "rhythm" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
795 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
796
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
797 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
798 id: GO:0050896
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
799 name: response to stimulus
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
800 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
801 alt_id: GO:0051869
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
802 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
803 comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
804 subset: gocheck_do_not_manually_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
805 subset: goslim_agr
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
806 subset: goslim_mouse
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
807 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
808 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
809 synonym: "physiological response to stimulus" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
810 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
811
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
812 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
813 id: GO:0051179
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
814 name: localization
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
815 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
816 alt_id: GO:1902578
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
817 def: "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation." [GOC:ai, GOC:dos]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
818 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
819 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
820 synonym: "establishment and maintenance of cellular component location" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
821 synonym: "establishment and maintenance of localization" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
822 synonym: "establishment and maintenance of position" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
823 synonym: "establishment and maintenance of substance location" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
824 synonym: "establishment and maintenance of substrate location" NARROW []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
825 synonym: "localisation" EXACT [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
826 synonym: "single organism localization" RELATED [GOC:TermGenie]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
827 synonym: "single-organism localization" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
828 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
829 created_by: jl
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
830 creation_date: 2013-12-18T13:51:04Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
831
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
832 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
833 id: GO:0051704
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
834 name: multi-organism process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
835 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
836 alt_id: GO:0051706
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
837 def: "A biological process which involves another organism of the same or different species." [GOC:jl]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
838 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
839 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
840 synonym: "interaction between organisms" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
841 synonym: "physiological interaction between organisms" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
842 synonym: "physiological interaction with other organism" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
843 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
844
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
845 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
846 id: GO:0055044
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
847 name: symplast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
848 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
849 def: "The interconnected cell membranes and intracellular regions of a plant. The interconnections occur via the plasmodesmata." [GOC:mtg_sensu]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
850 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
851 xref: Wikipedia:Symplast
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
852 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
853
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
854 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
855 id: GO:0060089
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
856 name: molecular transducer activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
857 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
858 def: "A compound molecular function in which an effector function is controlled by one or more regulatory components." [GOC:dos, GOC:pdt]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
859 subset: gocheck_do_not_manually_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
860 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
861 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
862 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
863
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
864 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
865 id: GO:0065007
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
866 name: biological regulation
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
867 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
868 def: "Any process that modulates a measurable attribute of any biological process, quality or function." [GOC:dph, GOC:isa_complete, GOC:mah, GOC:pr, GOC:vw]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
869 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
870 subset: goslim_pir
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
871 subset: gosubset_prok
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
872 synonym: "regulation" BROAD []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
873 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
874
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
875 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
876 id: GO:0071840
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
877 name: cellular component organization or biogenesis
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
878 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
879 alt_id: GO:0071841
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
880 def: "A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component." [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
881 subset: goslim_metagenomics
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
882 synonym: "cellular component organisation or biogenesis" EXACT [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
883 synonym: "cellular component organisation or biogenesis at cellular level" EXACT [GOC:mah]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
884 synonym: "cellular component organization or biogenesis at cellular level" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
885 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
886 created_by: midori
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
887 creation_date: 2010-09-10T01:39:16Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
888
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
889 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
890 id: GO:0090729
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
891 name: toxin activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
892 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
893 alt_id: GO:0050827
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
894 def: "Interacting selectively with one or more biological molecules in another organism (the \"target\" organism), initiating pathogenesis (leading to an abnormal, generally detrimental state) in the target organism. The activity should refer to an evolved function of the active gene product, i.e. one that was selected for. Examples include the activity of botulinum toxin, and snake venom." [GOC:pt]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
895 synonym: "toxin receptor binding" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
896 xref: Wikipedia:Toxin
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
897 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
898 created_by: tanyaberardini
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
899 creation_date: 2016-12-19T15:23:27Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
900
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
901 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
902 id: GO:0097423
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
903 name: mitochondrion-associated adherens complex
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
904 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
905 def: "An organelle arrangement comprised of the following elements: a mitochondrion positioned near the presynaptic membrane; an electron-dense mitochondrial plaque adjacent to the outer mitochondrial membrane that faces the presynaptic membrane; filament-like elements appearing to link the mitochondrial plaque to a cell-cell junction region (sometimes termed punctum adherens); tubular or vesicular-appearing membrane (also called vesicular chain) interposed among the filaments. Mitochondrion-associated adherens complexes were initially described in the dorsal horn of the spinal cord. They are found in calyces and other large terminals of the auditory brainstem, and in a variety of mammalian species including humans." [NIF_Subcellular:sao1933817066, PMID:20089910]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
906 synonym: "MAC" RELATED []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
907 synonym: "mitochondrial adhaerens complex" EXACT []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
908 xref: NIF_Subcellular:sao1933817066
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
909 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
910 created_by: paola
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
911 creation_date: 2012-11-07T13:38:50Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
912
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
913 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
914 id: GO:0098743
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
915 name: cell aggregation
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
916 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
917 def: "The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation." [GOC:dos]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
918 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
919
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
920 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
921 id: GO:0098754
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
922 name: detoxification
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
923 namespace: biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
924 def: "Any process that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance." [GOC:dos]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
925 subset: goslim_pombe
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
926 is_a: GO:0008150 ! biological_process
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
927
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
928 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
929 id: GO:0098772
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
930 name: molecular function regulator
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
931 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
932 def: "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators." [GOC:dos, GOC:pt]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
933 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
934 relationship: regulates GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
935
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
936 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
937 id: GO:0099080
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
938 name: supramolecular complex
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
939 namespace: cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
940 def: "A cellular component that consists of an indeterminate number of proteins or macromolecular complexes, organized into a regular, higher-order structure such as a polymer, sheet, network or a fiber." [GOC:dos]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
941 is_a: GO:0005575 ! cellular_component
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
942
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
943 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
944 id: GO:0104005
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
945 name: hijacked molecular function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
946 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
947 def: "A function that was not selected for in the evolution of an organism, but arises from co-option by another organism, e.g. a human protein used as a virus receptor." [GOC:pdt]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
948 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
949 created_by: dos
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
950 creation_date: 2017-08-04T02:12:09Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
951
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
952 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
953 id: GO:0140104
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
954 name: molecular carrier activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
955 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
956 def: "Directly binding to a specific ion or molecule and delivering it either to an acceptor molecule or to a specific location." [GOC:pdt]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
957 comment: https://github.com/geneontology/go-ontology/issues/14221
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
958 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
959 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
960 created_by: pg
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
961 creation_date: 2017-09-19T13:10:18Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
962
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
963 [Term]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
964 id: GO:0140110
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
965 name: transcription regulator activity
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
966 namespace: molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
967 def: "A molecular function that controls the rate, timing and/or magnitude of transcription of genetic information. The function of transcriptional regulators is to modulate gene expression at the transcription step so that they are expressed in the right cell at the right time and in the right amount throughout the life of the cell and the organism." [GOC:pg, GOC:txnOH-2018, Wikipedia:Transcription_factor]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
968 comment: https://github.com/geneontology/go-ontology/issues/13588
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
969 subset: gocheck_do_not_annotate
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
970 is_a: GO:0003674 ! molecular_function
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
971 created_by: pg
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
972 creation_date: 2017-10-18T07:05:44Z
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
973
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
974 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
975 id: ends_during
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
976 name: ends_during
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
977 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
978 xref: RO:0002093
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
979
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
980 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
981 id: happens_during
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
982 name: happens_during
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
983 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
984 xref: RO:0002092
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
985 is_transitive: true
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
986 is_a: ends_during ! ends_during
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
987
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
988 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
989 id: has_part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
990 name: has_part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
991 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
992 xref: BFO:0000051
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
993 is_transitive: true
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
994
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
995 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
996 id: negatively_regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
997 name: negatively regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
998 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
999 xref: RO:0002212
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1000 is_a: regulates ! regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1001 transitive_over: part_of ! part of
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1002
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1003 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1004 id: never_in_taxon
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1005 name: never_in_taxon
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1006 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1007 xref: RO:0002161
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1008 expand_assertion_to: "Class: ?X DisjointWith: RO_0002162 some ?Y" []
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1009 is_metadata_tag: true
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1010 is_class_level: true
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1011
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1012 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1013 id: occurs_in
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1014 name: occurs in
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1015 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1016 xref: BFO:0000066
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1017 holds_over_chain: part_of occurs_in
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1018 transitive_over: part_of ! part of
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1019
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1020 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1021 id: part_of
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1022 name: part of
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1023 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1024 xref: BFO:0000050
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1025 is_transitive: true
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1026 inverse_of: has_part ! has_part
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1027
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1028 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1029 id: positively_regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1030 name: positively regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1031 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1032 xref: RO:0002213
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1033 holds_over_chain: negatively_regulates negatively_regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1034 is_a: regulates ! regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1035 transitive_over: part_of ! part of
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1036
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1037 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1038 id: regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1039 name: regulates
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1040 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1041 xref: RO:0002211
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1042 is_transitive: true
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1043 transitive_over: part_of ! part of
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1044
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1045 [Typedef]
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1046 id: starts_during
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1047 name: starts_during
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1048 namespace: external
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1049 xref: RO:0002091
294de027cb5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment commit c41d1d8f48da033f601b003d71e0e22345ccdbdb
iuc
parents:
diff changeset
1050