Mercurial > repos > iuc > graphlan_annotate

changeset 2:97e3b735ed22 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2/ commit fb23555b3087ca4022f0d186dfea40c2407ca211
author iuc
date Fri, 09 Feb 2024 21:29:45 +0000
parents cf1df6b2220a
children
files graphlan_annotate.xml graphlan_macros.xml
diffstat 2 files changed, 7 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/graphlan_annotate.xml	Fri Jan 24 16:25:56 2020 -0500
+++ b/graphlan_annotate.xml	Fri Feb 09 21:29:45 2024 +0000
@@ -3,6 +3,7 @@
     <macros>
         <import>graphlan_macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"/>
     <stdio>
         <regex match="Warning"
@@ -44,7 +45,7 @@
 
 The annotation file is a tab-delimited file listing the graphical options for clades. Usually each line has three fields: the name of the clade, the name of the option, and the value to assign to the option. Lines can however have two fields (typically for "global" option not referred to a specific clade) or four fields when the external rings (a sort of circular heatmap) is specified.
 
-For more information, check the `user manual <https://bitbucket.org/nsegata/graphlan/overview>`_.
+For more information, check the `user manual <https://github.com/biobakery/graphlan>`_.
 
     ]]></help>
     <expand macro="citations"/>
--- a/graphlan_macros.xml	Fri Jan 24 16:25:56 2020 -0500
+++ b/graphlan_macros.xml	Fri Feb 09 21:29:45 2024 +0000
@@ -1,6 +1,11 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@WRAPPER_VERSION@">1.1.3</token>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">graphlan</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">graphlan</requirement>