Mercurial > repos > iuc > gtdbtk_classify_wf

annotate test-data/gtdbtk_database.loc @ 0:c4db8c4de66f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
author iuc
date Tue, 13 Dec 2022 09:48:28 +0000
parents
children 65d52c693b8e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
1 # This is a sample file distributed with Galaxy that enables tools
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
2 # to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
3 # file has this format (longer white space characters are TAB characters):
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
4 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
5 # <unique_build_id> <display_name> <directory_path>
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
6 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
7 # So, for example, if you have the gtdbtk 202 stored in
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
8 # /depot/data2/galaxy/gtdbtk/202/,
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
9 # then the gtdbtk_databases.loc entry would look like this:
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
10 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
11 # release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
12 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
13 # and your /depot/data2/galaxy/gtdbtk/release202 directory
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
14 # would contain GTDB-Tk database files for release 202, sommething like this:
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
15 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
16 #drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
17 #-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
18 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
19 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
20 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
21 #drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
22 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
23 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
24 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
25 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
parents:
diff changeset
26 gtdbtk202 GTDB-Tk database v202 ${__HERE__}/gtdbtk202