Mercurial > repos > iuc > gtdbtk_classify_wf
changeset 7:fce109bc2aa7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit c4750d805711ffa1245a2797439baf52429b4701
| author | iuc |
|---|---|
| date | Mon, 16 Sep 2024 14:55:29 +0000 |
| parents | a09c8c901603 |
| children | b907a3c0434f |
| files | macros.xml test-data/gtdbtk_database_metadata_versioned.loc test-data/gtdbtk_database_versioned.loc tool-data/gtdbtk_database_metadata_versioned.loc.sample tool-data/gtdbtk_database_versioned.loc.sample |
| diffstat | 5 files changed, 52 insertions(+), 52 deletions(-) [+] |
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--- a/macros.xml Fri Sep 13 11:15:36 2024 +0000 +++ b/macros.xml Mon Sep 16 14:55:29 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">2.3.2</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@PROFILE@">22.05</token> <xml name="requirements"> <requirements>
--- a/test-data/gtdbtk_database_metadata_versioned.loc Fri Sep 13 11:15:36 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -# This is a sample file distributed with Galaxy that enables tools -# to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc -# file has this format (longer white space characters are TAB characters): -# -# <unique_build_id> <display_name> <version> <directory_path> -# -# So, for example, if you have the gtdbtk 202 stored in -# /depot/data2/galaxy/gtdbtk/202/, -# then the gtdbtk_databases.loc entry would look like this: -# -# release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202 -# -# and your /depot/data2/galaxy/gtdbtk/release202 directory -# would contain GTDB-Tk database files for release 202, sommething like this: -# -#drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/ -#-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv -#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/ -#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/ -gtdbtk214 GTDB-Tk database v214 ${__HERE__}/gtdbtk214/
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gtdbtk_database_versioned.loc Mon Sep 16 14:55:29 2024 +0000 @@ -0,0 +1,26 @@ +# This is a sample file distributed with Galaxy that enables tools +# to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc +# file has this format (longer white space characters are TAB characters): +# +# <unique_build_id> <display_name> <version> <directory_path> +# +# So, for example, if you have the gtdbtk 202 stored in +# /depot/data2/galaxy/gtdbtk/202/, +# then the gtdbtk_databases.loc entry would look like this: +# +# release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202 +# +# and your /depot/data2/galaxy/gtdbtk/release202 directory +# would contain GTDB-Tk database files for release 202, sommething like this: +# +#drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/ +#-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv +#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/ +#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/ +gtdbtk214 GTDB-Tk database v214 ${__HERE__}/gtdbtk214/
--- a/tool-data/gtdbtk_database_metadata_versioned.loc.sample Fri Sep 13 11:15:36 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,25 +0,0 @@ -# This is a sample file distributed with Galaxy that enables tools -# to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc -# file has this format (longer white space characters are TAB characters): -# -# <unique_build_id> <display_name> <directory_path> -# -# So, for example, if you have the gtdbtk 202 stored in -# /depot/data2/galaxy/gtdbtk/202/, -# then the gtdbtk_databases.loc entry would look like this: -# -# release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202 -# -# and your /depot/data2/galaxy/gtdbtk/release202 directory -# would contain GTDB-Tk database files for release 202, sommething like this: -# -#drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/ -#-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv -#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/ -#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/ -#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/gtdbtk_database_versioned.loc.sample Mon Sep 16 14:55:29 2024 +0000 @@ -0,0 +1,25 @@ +# This is a sample file distributed with Galaxy that enables tools +# to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc +# file has this format (longer white space characters are TAB characters): +# +# <unique_build_id> <display_name> <directory_path> +# +# So, for example, if you have the gtdbtk 202 stored in +# /depot/data2/galaxy/gtdbtk/202/, +# then the gtdbtk_databases.loc entry would look like this: +# +# release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202 +# +# and your /depot/data2/galaxy/gtdbtk/release202 directory +# would contain GTDB-Tk database files for release 202, sommething like this: +# +#drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/ +#-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv +#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/ +#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/