Mercurial > repos > iuc > gvcftools_extract_variants

annotate test-data/variants_noheader_output1.vcf @ 0:bf8841b0a6b0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
author iuc
date Mon, 20 Feb 2017 06:35:42 -0500
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bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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diff changeset
1 gi|448814763|ref|NC_000962.3| 1977 . A G,<NON_REF> 1986 . DP=53;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2016,0,2016:0,0,11,42
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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2 gi|448814763|ref|NC_000962.3| 4013 . T C,<NON_REF> 2081 . DP=53;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2111,0,2111:0,0,29,24
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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3 gi|448814763|ref|NC_000962.3| 7362 . G C,<NON_REF> 3369 . BaseQRankSum=1.693;ClippingRankSum=1.693;DP=88;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0;MQRankSum=0.827;ReadPosRankSum=1.614 GT:AD:DP:GQ:PL:SB 1:1,87,0:88:99:3399,0,3408:0,1,40,47
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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4 gi|448814763|ref|NC_000962.3| 7585 . G C,<NON_REF> 2294 . DP=61;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2324,0,2324:0,0,36,24
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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5 gi|448814763|ref|NC_000962.3| 9304 . G A,<NON_REF> 2343 . DP=69;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2373,0,2373:0,0,31,38
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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6 gi|448814763|ref|NC_000962.3| 11311 . A C,<NON_REF> 3627 . DP=96;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,96,0:96:99:3657,0,3657:0,0,31,65
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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7 gi|448814763|ref|NC_000962.3| 11370 . C T,<NON_REF> 2699 . DP=77;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2729,0,2729:0,0,21,56
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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8 gi|448814763|ref|NC_000962.3| 11879 . A G,<NON_REF> 2659 . DP=70;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2689,0,2689:0,0,36,33
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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9 gi|448814763|ref|NC_000962.3| 14785 . T C,<NON_REF> 3506 . DP=90;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,90,0:90:99:3536,0,3536:0,0,38,52
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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10 gi|448814763|ref|NC_000962.3| 21795 . G A,<NON_REF> 784 . DP=24;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:814,0,814:0,0,8,16
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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11 gi|448814763|ref|NC_000962.3| 24698 . GCCGCGTTGCTCGGGGTAA G,<NON_REF> 1536.97 . DP=51;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.01;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1576,0,1576:0,0,25,11
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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12 gi|448814763|ref|NC_000962.3| 26959 . C G,<NON_REF> 2474 . DP=66;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2504,0,2504:0,0,41,25
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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13 gi|448814763|ref|NC_000962.3| 29482 . CA C,<NON_REF> 2528.97 . DP=74;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.14;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2568,0,2568:0,0,34,38
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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14 gi|448814763|ref|NC_000962.3| 30519 . C T,<NON_REF> 2289 . BaseQRankSum=1.681;ClippingRankSum=0.026;DP=68;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0;MQRankSum=-1.525;ReadPosRankSum=1.060 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2319,0,2329:1,0,47,19
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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15 gi|448814763|ref|NC_000962.3| 30688 . T G,<NON_REF> 2109 . DP=56;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2139,0,2139:0,0,30,26
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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16 gi|448814763|ref|NC_000962.3| 30943 . C T,<NON_REF> 1534 . DP=49;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1564,0,1564:0,0,28,21
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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17 gi|448814763|ref|NC_000962.3| 31077 . C T,<NON_REF> 1499 . DP=43;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1529,0,1529:0,0,24,19
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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18 gi|448814763|ref|NC_000962.3| 32349 . CCCGCGCGTCGGCGATGCGTCGCGTCGAGTCGGCGATG C,<NON_REF> 3070.97 . DP=75;MLEAC=1,0;MLEAF=1.00,0.00;MQ=65.20;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3110,0,3110:0,0,35,35
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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19 gi|448814763|ref|NC_000962.3| 34044 . T C,<NON_REF> 3703 . DP=94;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,94,0:94:99:3733,0,3733:0,0,60,34
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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20 gi|448814763|ref|NC_000962.3| 37031 . C G,<NON_REF> 1773 . DP=47;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1803,0,1803:0,0,22,24
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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21 gi|448814763|ref|NC_000962.3| 37910 . C A,<NON_REF> 3793 . DP=113;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,113,0:113:99:3823,0,3823:0,0,62,51
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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22 gi|448814763|ref|NC_000962.3| 39223 . GC G,<NON_REF> 1460.97 . DP=50;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1500,0,1500:0,0,19,27
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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23 gi|448814763|ref|NC_000962.3| 42967 . G C,<NON_REF> 2609 . DP=67;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2639,0,2639:0,0,15,52
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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24 gi|448814763|ref|NC_000962.3| 50557 . T C,<NON_REF> 2896 . DP=73;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2926,0,2926:0,0,43,30
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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25 gi|448814763|ref|NC_000962.3| 51949 . A G,<NON_REF> 3374 . DP=77;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:3404,0,3404:0,0,33,43
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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26 gi|448814763|ref|NC_000962.3| 51954 . T A,<NON_REF> 3329 . DP=72;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3359,0,3359:0,0,29,42
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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27 gi|448814763|ref|NC_000962.3| 53785 . C G,<NON_REF> 3639 . DP=96;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,96,0:96:99:3669,0,3669:0,0,54,42
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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28 gi|448814763|ref|NC_000962.3| 54394 . A G,<NON_REF> 3218 . DP=83;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,83,0:83:99:3248,0,3248:0,0,40,43
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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29 gi|448814763|ref|NC_000962.3| 55553 . C CCGCCGT,<NON_REF> 942.97 . DP=25;MLEAC=1,0;MLEAF=1.00,0.00;MQ=74.16;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:982,0,982:0,0,8,16
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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30 gi|448814763|ref|NC_000962.3| 57393 . A T,<NON_REF> 1304 . DP=36;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1334,0,1334:0,0,32,4
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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31 gi|448814763|ref|NC_000962.3| 62049 . A G,<NON_REF> 1820 . DP=48;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1850,0,1850:0,0,24,24
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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32 gi|448814763|ref|NC_000962.3| 62657 . G A,<NON_REF> 3950 . DP=109;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,109,0:109:99:3980,0,3980:0,0,64,45
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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33 gi|448814763|ref|NC_000962.3| 66285 . C G,<NON_REF> 2074 . DP=53;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2104,0,2104:0,0,20,33
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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34 gi|448814763|ref|NC_000962.3| 69871 . C T,<NON_REF> 3532 . DP=101;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,101,0:101:99:3562,0,3562:0,0,42,59
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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35 gi|448814763|ref|NC_000962.3| 69989 . G A,<NON_REF> 1569 . DP=50;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1599,0,1599:0,0,16,34
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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36 gi|448814763|ref|NC_000962.3| 70816 . A G,<NON_REF> 3136 . DP=83;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,83,0:83:99:3166,0,3166:0,0,59,24
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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37 gi|448814763|ref|NC_000962.3| 71336 . G C,<NON_REF> 1177 . DP=30;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1207,0,1207:0,0,25,5
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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38 gi|448814763|ref|NC_000962.3| 71584 . C CCGAGCGCTGTTCTGGCGCTAATCTGACGCTAGAATAG,<NON_REF> 3237.97 . DP=53;MLEAC=1,0;MLEAF=1.00,0.00;MQ=69.86;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:3277,0,3287:0,0,28,19
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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39 gi|448814763|ref|NC_000962.3| 75264 . C T,<NON_REF> 2055 . DP=58;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2085,0,2085:0,0,24,34
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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40 gi|448814763|ref|NC_000962.3| 75940 . G C,<NON_REF> 2042 . DP=55;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2072,0,2072:0,0,32,23
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
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41 gi|448814763|ref|NC_000962.3| 80616 . C G,<NON_REF> 3150 . DP=81;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:3180,0,3180:0,0,39,42
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
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42 gi|448814763|ref|NC_000962.3| 83982 . A G,<NON_REF> 3138 . DP=83;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,82,0:82:99:3168,0,3168:0,0,38,44
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
43 gi|448814763|ref|NC_000962.3| 86576 . G A,<NON_REF> 2322 . DP=65;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2352,0,2352:0,0,31,34
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
44 gi|448814763|ref|NC_000962.3| 92199 . T G,<NON_REF> 697 . DP=20;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:727,0,727:0,0,15,5
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
45 gi|448814763|ref|NC_000962.3| 95591 . G T,<NON_REF> 2735 . DP=77;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2765,0,2765:0,0,29,48
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
46 gi|448814763|ref|NC_000962.3| 97388 . G T,<NON_REF> 3943 . DP=114;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,113,0:113:99:3973,0,3973:0,0,57,56
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
47 gi|448814763|ref|NC_000962.3| 103836 . G T,<NON_REF> 413 . DP=12;MLEAC=1,0;MLEAF=1.00,0.00;MQ=69.44;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:443,0,443:0,0,0,12
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
48 gi|448814763|ref|NC_000962.3| 104712 . C T,<NON_REF> 518 . DP=15;MLEAC=1,0;MLEAF=1.00,0.00;MQ=68.35;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:548,0,548:0,0,14,1
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
49 gi|448814763|ref|NC_000962.3| 109812 . C T,<NON_REF> 109 . BaseQRankSum=-4.970;ClippingRankSum=2.099;DP=59;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0;MQRankSum=-1.061;ReadPosRankSum=0.191 GT:AD:DP:GQ:PL:SB 1:26,33,0:59:99:139,0,1182:13,13,19,14
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
50 gi|448814763|ref|NC_000962.3| 116000 . T G,<NON_REF> 2435 . DP=63;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2465,0,2465:0,0,40,23
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
51 gi|448814763|ref|NC_000962.3| 119669 . G A,<NON_REF> 3467 . DP=96;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,96,0:96:99:3497,0,3497:0,0,48,48
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
52 gi|448814763|ref|NC_000962.3| 122109 . A G,<NON_REF> 2888 . DP=79;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:2918,0,2918:0,0,53,26
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
53 gi|448814763|ref|NC_000962.3| 125830 . G GA,<NON_REF> 2470.97 . DP=81;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2510,0,2510:0,0,20,56
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
54 gi|448814763|ref|NC_000962.3| 128338 . G C,<NON_REF> 1736 . DP=45;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1766,0,1766:0,0,24,21
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
55 gi|448814763|ref|NC_000962.3| 131174 . T TG,<NON_REF> 2379.97 . DP=71;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2419,0,2419:0,0,40,27
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
56 gi|448814763|ref|NC_000962.3| 132417 . C G,<NON_REF> 490 . DP=13;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:520,0,520:0,0,1,12
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
57 gi|448814763|ref|NC_000962.3| 133839 . C T,<NON_REF> 2631 . DP=75;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2661,0,2661:0,0,35,40
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
58 gi|448814763|ref|NC_000962.3| 137850 . GT G,<NON_REF> 2180.97 . DP=77;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2220,0,2220:0,0,34,34
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
59 gi|448814763|ref|NC_000962.3| 144390 . G A,<NON_REF> 1439 . DP=41;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1469,0,1469:0,0,28,13
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
60 gi|448814763|ref|NC_000962.3| 146087 . T C,<NON_REF> 2308 . DP=59;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2338,0,2338:0,0,30,29
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
61 gi|448814763|ref|NC_000962.3| 147985 . C T,<NON_REF> 2152 . DP=62;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2182,0,2182:0,0,24,38
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
62 gi|448814763|ref|NC_000962.3| 150326 . CAATCGGCCT C,<NON_REF> 140.97 . DP=4;MLEAC=1,0;MLEAF=1.00,0.00;MQ=59.60;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:180,0,180:0,0,2,2
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
63 gi|448814763|ref|NC_000962.3| 151177 . G C,<NON_REF> 2127 . DP=56;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2157,0,2157:0,0,37,19
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
64 gi|448814763|ref|NC_000962.3| 154283 . T C,<NON_REF> 2901 . BaseQRankSum=1.646;ClippingRankSum=-0.909;DP=80;MLEAC=1,0;MLEAF=1.00,0.00;MQ=68.73;MQ0=0;MQRankSum=-1.213;ReadPosRankSum=1.342 GT:AD:DP:GQ:PL:SB 1:1,79,0:80:99:2931,0,2955:1,0,38,41
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
65 gi|448814763|ref|NC_000962.3| 155293 . G A,<NON_REF> 1652 . DP=49;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1682,0,1682:0,0,27,22
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
66 gi|448814763|ref|NC_000962.3| 163573 . A C,<NON_REF> 1809 . DP=48;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1839,0,1839:0,0,23,25
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
67 gi|448814763|ref|NC_000962.3| 174684 . C A,<NON_REF> 1780 . DP=52;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1810,0,1810:0,0,30,22
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
68 gi|448814763|ref|NC_000962.3| 177596 . T C,<NON_REF> 2967 . DP=78;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:2997,0,2997:0,0,63,15
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
69 gi|448814763|ref|NC_000962.3| 177857 . G A,<NON_REF> 1506 . DP=43;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1536,0,1536:0,0,1,41
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
70 gi|448814763|ref|NC_000962.3| 178946 . C T,<NON_REF> 1368 . DP=40;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1398,0,1398:0,0,12,28
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
71 gi|448814763|ref|NC_000962.3| 187584 . A G,<NON_REF> 2307 . DP=60;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2337,0,2337:0,0,29,31
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
72 gi|448814763|ref|NC_000962.3| 187738 . G A,<NON_REF> 2535 . DP=72;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2565,0,2565:0,0,36,36
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
73 gi|448814763|ref|NC_000962.3| 188800 . T C,<NON_REF> 1495 . DP=41;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1525,0,1525:0,0,20,21
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
74 gi|448814763|ref|NC_000962.3| 191853 . A G,<NON_REF> 2101 . DP=55;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2131,0,2131:0,0,21,34
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
75 gi|448814763|ref|NC_000962.3| 194681 . G C,<NON_REF> 1539 . DP=39;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1569,0,1569:0,0,13,26
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
76 gi|448814763|ref|NC_000962.3| 196642 . C T,<NON_REF> 4724 . DP=132;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,132,0:132:99:4754,0,4754:0,0,59,73
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
77 gi|448814763|ref|NC_000962.3| 206339 . T C,<NON_REF> 2188 . DP=57;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2218,0,2218:0,0,33,24
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
78 gi|448814763|ref|NC_000962.3| 220050 . C T,<NON_REF> 981 . DP=28;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1011,0,1011:0,0,3,25
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
79 gi|448814763|ref|NC_000962.3| 223942 . T C,<NON_REF> 486 . DP=13;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:516,0,516:0,0,10,3
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
80 gi|448814763|ref|NC_000962.3| 225323 . T C,<NON_REF> 2159 . DP=57;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2189,0,2189:0,0,29,28
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
81 gi|448814763|ref|NC_000962.3| 227098 . T C,<NON_REF> 2543 . DP=66;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2573,0,2573:0,0,31,35
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
82 gi|448814763|ref|NC_000962.3| 231114 . C G,<NON_REF> 4042 . DP=106;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,106,0:106:99:4072,0,4072:0,0,54,52
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
83 gi|448814763|ref|NC_000962.3| 232574 . G T,<NON_REF> 2181 . DP=61;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2211,0,2211:0,0,32,29
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
84 gi|448814763|ref|NC_000962.3| 234477 . T G,<NON_REF> 329 . DP=12;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:359,0,359:0,0,8,4
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
85 gi|448814763|ref|NC_000962.3| 234496 . C CGT,<NON_REF> 995.97 . DP=20;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:1035,0,1035:0,0,12,8
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
86 gi|448814763|ref|NC_000962.3| 251468 . G T,<NON_REF> 2046 . DP=62;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2076,0,2076:0,0,43,19
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
87 gi|448814763|ref|NC_000962.3| 261869 . T C,<NON_REF> 394 . DP=11;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:424,0,424:0,0,2,9
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
88 gi|448814763|ref|NC_000962.3| 265475 . G A,<NON_REF> 4124 . DP=114;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,114,0:114:99:4154,0,4154:0,0,48,66
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
89 gi|448814763|ref|NC_000962.3| 265554 . A C,<NON_REF> 4281 . DP=114;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,113,0:113:99:4311,0,4311:0,0,56,57
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
90 gi|448814763|ref|NC_000962.3| 265968 . C G,<NON_REF> 2091 . DP=54;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2121,0,2121:0,0,22,32
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
91 gi|448814763|ref|NC_000962.3| 278681 . C G,<NON_REF> 2284 . DP=59;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2314,0,2314:0,0,36,23
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
92 gi|448814763|ref|NC_000962.3| 283614 . T C,<NON_REF> 1794 . DP=47;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1824,0,1824:0,0,30,17
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
93 gi|448814763|ref|NC_000962.3| 284623 . G A,<NON_REF> 1019 . DP=31;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1049,0,1049:0,0,22,9
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
94 gi|448814763|ref|NC_000962.3| 285772 . A C,<NON_REF> 1085 . DP=28;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1115,0,1115:0,0,11,17
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
95 gi|448814763|ref|NC_000962.3| 285871 . A G,<NON_REF> 1112 . DP=29;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1142,0,1142:0,0,19,10
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
96 gi|448814763|ref|NC_000962.3| 293628 . A AC,<NON_REF> 1458.97 . DP=46;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1498,0,1498:0,0,36,10
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
97 gi|448814763|ref|NC_000962.3| 301290 . G A,<NON_REF> 2691 . DP=81;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2721,0,2721:0,0,41,40
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
98 gi|448814763|ref|NC_000962.3| 304679 . G T,<NON_REF> 3530 . DP=101;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,101,0:101:99:3560,0,3560:0,0,46,55
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
99 gi|448814763|ref|NC_000962.3| 304923 . A G,<NON_REF> 3082 . DP=84;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,84,0:84:99:3112,0,3112:0,0,52,32
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
100 gi|448814763|ref|NC_000962.3| 310973 . G A,<NON_REF> 1535 . DP=45;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1565,0,1565:0,0,28,17
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
101 gi|448814763|ref|NC_000962.3| 311613 . G T,<NON_REF> 2695 . DP=77;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2725,0,2725:0,0,44,33
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
102 gi|448814763|ref|NC_000962.3| 315502 . C A,<NON_REF> 1010 . DP=30;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1040,0,1040:0,0,14,16
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
103 gi|448814763|ref|NC_000962.3| 320038 . G A,<NON_REF> 626 . DP=19;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:656,0,656:0,0,9,10
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
104 gi|448814763|ref|NC_000962.3| 328641 . G T,<NON_REF> 1816 . DP=51;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1846,0,1846:0,0,17,34
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
105 gi|448814763|ref|NC_000962.3| 335971 . A G,<NON_REF> 1022 . DP=25;MLEAC=1,0;MLEAF=1.00,0.00;MQ=63.45;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1052,0,1052:0,0,12,13
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
106 gi|448814763|ref|NC_000962.3| 336047 . C G,<NON_REF> 1353 . BaseQRankSum=-0.603;ClippingRankSum=-1.789;DP=57;MLEAC=1,0;MLEAF=1.00,0.00;MQ=67.67;MQ0=0;MQRankSum=1.492;ReadPosRankSum=-2.141 GT:AD:DP:GQ:PL:SB 1:14,43,0:57:99:1383,0,2013:7,7,18,25
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
107 gi|448814763|ref|NC_000962.3| 336050 . A G,<NON_REF> 1240 . BaseQRankSum=3.331;ClippingRankSum=-0.852;DP=49;MLEAC=1,0;MLEAF=1.00,0.00;MQ=67.28;MQ0=0;MQRankSum=-0.808;ReadPosRankSum=-1.826 GT:AD:DP:GQ:PL:SB 1:14,35,0:49:99:1270,0,1900:7,7,12,23
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
108 gi|448814763|ref|NC_000962.3| 336053 . G C,<NON_REF> 870 . BaseQRankSum=-0.454;ClippingRankSum=-0.570;DP=47;MLEAC=1,0;MLEAF=1.00,0.00;MQ=67.16;MQ0=0;MQRankSum=0.896;ReadPosRankSum=-1.780 GT:AD:DP:GQ:PL:SB 1:14,33,0:47:99:900,0,1530:7,7,11,22
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
109 gi|448814763|ref|NC_000962.3| 336191 . C T,<NON_REF> 1569 . DP=44;MLEAC=1,0;MLEAF=1.00,0.00;MQ=69.79;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1599,0,1599:0,0,38,6
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
110 gi|448814763|ref|NC_000962.3| 336772 . C T,<NON_REF> 364 . DP=9;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:394,0,394:0,0,1,8
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
111 gi|448814763|ref|NC_000962.3| 336773 . A G,<NON_REF> 364 . DP=8;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:394,0,394:0,0,1,7
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
112 gi|448814763|ref|NC_000962.3| 336780 . G A,<NON_REF> 285 . DP=4;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:315,0,315:0,0,0,4
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
113 gi|448814763|ref|NC_000962.3| 336781 . T C,<NON_REF> 150 . DP=3;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:180,0,180:0,0,0,3
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
114 gi|448814763|ref|NC_000962.3| 336782 . G C,<NON_REF> 150 . DP=2;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:99:180,0,180:0,0,0,2
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
115 gi|448814763|ref|NC_000962.3| 338020 . A C,<NON_REF> 45 . DP=2;MLEAC=1,0;MLEAF=1.00,0.00;MQ=70.00;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:75:75,0,75:0,0,2,0
bf8841b0a6b0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools commit a35519a8cc09ea0a6e6ac5f57ff36fd738e5adb7
iuc
parents:
diff changeset
116 gi|448814763|ref|NC_000962.3| 338100 . T C,<NON_REF> 216 . DP=6;MLEAC=1,0;MLEAF=1.00,0.00;MQ=69.19;MQ0=0 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:246,0,246:0,0,6,0