Mercurial > repos > iuc > hamronize_summarize

comparison hamronize_summarize.xml @ 4:f8bcc852f6b3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit b4943555d76f7e352de3f396c51d3dfb90ed633d
author iuc
date Fri, 09 Feb 2024 21:27:25 +0000
parents 243c87f34f39
children 88045b4d5597
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3:243c87f34f39 4:f8bcc852f6b3
1 <tool id="hamronize_summarize" name="hamronize: summarize" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> 1 <tool id="hamronize_summarize" name="hamronize: summarize" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
2 <description> harmorization reports</description> 2 <description> harmorization reports</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
6 <expand macro="requirements" /> 7 <expand macro="requirements" />
7 <expand macro="version_command" /> 8 <expand macro="version_command" />
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 #for $counter, $report in enumerate($reports): 10 #for $counter, $report in enumerate($reports):
10 #if $report.is_of_type('tsv', 'tabular'): 11 #if $report.is_of_type('tsv', 'tabular'):
35 <option value="interactive">interactive</option> 36 <option value="interactive">interactive</option>
36 </param> 37 </param>
37 </inputs> 38 </inputs>
38 39
39 <outputs> 40 <outputs>
40 <data format="tabular" name="output_tsv" label="${tool.name} on ${on_string}: Output" from_work_dir="output.tsv"> 41 <data format="tabular" name="output_tsv" label="${tool.name} on ${on_string}: Table" from_work_dir="output.tsv">
41 <filter>summary_type == "tsv"</filter> 42 <filter>summary_type == "tsv"</filter>
42 </data> 43 </data>
43 <data format="json" name="output_json" label="${tool.name} on ${on_string}: Output" from_work_dir="output.json"> 44 <data format="json" name="output_json" label="${tool.name} on ${on_string}: JSON" from_work_dir="output.json">
44 <filter>summary_type == "json"</filter> 45 <filter>summary_type == "json"</filter>
45 </data> 46 </data>
46 <data format="html" name="output_html" label="${tool.name} on ${on_string}: Output" from_work_dir="output.html"> 47 <data format="html" name="output_html" label="${tool.name} on ${on_string}: Interactive" from_work_dir="output.html">
47 <filter>summary_type == "interactive"</filter> 48 <filter>summary_type == "interactive"</filter>
48 </data> 49 </data>
49 </outputs> 50 </outputs>
50 <tests> 51 <tests>
51 <!-- tsv output --> 52 <!-- tsv output -->
75 **Inputs** 76 **Inputs**
76 A list of hamronize reports 77 A list of hamronize reports
77 78
78 ]]> 79 ]]>
79 </help> 80 </help>
81 <expand macro="citations"/>
80 </tool> 82 </tool>