Mercurial > repos > iuc > hamronize_summarize

changeset 4:f8bcc852f6b3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit b4943555d76f7e352de3f396c51d3dfb90ed633d
author iuc
date Fri, 09 Feb 2024 21:27:25 +0000
parents 243c87f34f39
children 88045b4d5597
files hamronize_summarize.xml macros.xml
diffstat 2 files changed, 15 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/hamronize_summarize.xml	Fri Aug 05 12:58:46 2022 +0000
+++ b/hamronize_summarize.xml	Fri Feb 09 21:27:25 2024 +0000
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements" />
     <expand macro="version_command" />
     <command detect_errors="exit_code"><![CDATA[
@@ -37,13 +38,13 @@
     </inputs>
 
     <outputs>
-        <data format="tabular" name="output_tsv" label="${tool.name} on ${on_string}: Output" from_work_dir="output.tsv">
+        <data format="tabular" name="output_tsv" label="${tool.name} on ${on_string}: Table" from_work_dir="output.tsv">
             <filter>summary_type == "tsv"</filter>
         </data>
-        <data format="json" name="output_json" label="${tool.name} on ${on_string}: Output" from_work_dir="output.json">
+        <data format="json" name="output_json" label="${tool.name} on ${on_string}: JSON" from_work_dir="output.json">
             <filter>summary_type == "json"</filter>
         </data>
-        <data format="html" name="output_html" label="${tool.name} on ${on_string}: Output" from_work_dir="output.html">
+        <data format="html" name="output_html" label="${tool.name} on ${on_string}: Interactive" from_work_dir="output.html">
             <filter>summary_type == "interactive"</filter>
         </data>
     </outputs>
@@ -77,4 +78,5 @@
             
         ]]>
     </help>
+    <expand macro="citations"/>
 </tool>
--- a/macros.xml	Fri Aug 05 12:58:46 2022 +0000
+++ b/macros.xml	Fri Feb 09 21:27:25 2024 +0000
@@ -1,30 +1,34 @@
 <macros>
     <token name="@TOOL_VERSION@">1.0.3</token>
     <token name="@PROFILE@">20.05</token>
-
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">hamronization</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">hamronization</requirement>
         </requirements>
     </xml>
-
     <xml name="input_file_name">
         <param name="input_file_name" type="text" label="Input file name" help="Sample name which was scanned with the tool"></param>
     </xml>
-
     <xml name="reference_database_id">
         <param name="reference_database_id" type="text" label="Reference database ID" help="String containing the reference_database_id of this tool"></param>
     </xml>
-
     <xml name="reference_database_version">
         <param name="reference_database_version" type="text" label="Reference database version"></param>
     </xml>
-
     <xml name="analysis_software_version">
         <param name="analysis_software_version" type="text" label="Analysis software version"></param>
     </xml>
-
     <xml name="version_command">
         <version_command>hamronize --version</version_command>
     </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.5281/zenodo.10015946</citation>
+        </citations>
+    </xml>
 </macros>