Mercurial > repos > iuc > hamronize_summarize
view test-data/hamronized_abricate.tsv @ 4:f8bcc852f6b3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit b4943555d76f7e352de3f396c51d3dfb90ed633d
author | iuc |
---|---|
date | Fri, 09 Feb 2024 21:27:25 +0000 |
parents | ef76d74a7171 |
children |
line wrap: on
line source
input_file_name gene_symbol gene_name reference_database_id reference_database_version reference_accession analysis_software_name analysis_software_version sequence_identity input_sequence_id input_protein_start input_protein_stop input_gene_start input_gene_stop reference_protein_start reference_protein_stop reference_gene_start reference_gene_stop strand_orientation coverage_depth coverage_percentage coverage_ratio reference_gene_length reference_protein_length input_gene_length input_protein_length drug_class antimicrobial_agent resistance_mechanism GCF_010120755.1_ASM1012075v1_genomic eat(A) ABC-F type ribosomal protection protein Eat(A) ncbi db_v_1 NG_047762.1 abricate tool_v_1 100.0 NZ_CP039729.1 656118 657620 + 100.0 PLEUROMUTILIN GCF_010120755.1_ASM1012075v1_genomic aacA-ENT1 aminoglycoside 6'-N-acetyltransferase ncbi db_v_1 NG_052371.1 abricate tool_v_1 100.0 NZ_CP039729.1 2163439 2163987 - 100.0 AMINOGLYCOSIDE GCF_010120755.1_ASM1012075v1_genomic msr(C) ABC-F type ribosomal protection protein Msr(C) ncbi db_v_1 NG_048003.1 abricate tool_v_1 98.92 NZ_CP039729.1 2564038 2565516 - 100.0 MACROLIDE GCF_010120755.1_ASM1012075v1_genomic vanX-M D-Ala-D-Ala dipeptidase VanX-M ncbi db_v_1 NG_048495.1 abricate tool_v_1 100.0 NZ_CP039730.1 43619 44197 - 95.07 VANCOMYCIN GCF_010120755.1_ASM1012075v1_genomic vanM D-alanine--(R)-lactate ligase VanM ncbi db_v_1 NG_048396.1 abricate tool_v_1 100.0 NZ_CP039730.1 44203 45234 - 100.0 VANCOMYCIN GCF_010120755.1_ASM1012075v1_genomic vanH-M D-lactate dehydrogenase VanH-M ncbi db_v_1 NG_048388.1 abricate tool_v_1 100.0 NZ_CP039730.1 45227 46207 - 100.0 VANCOMYCIN GCF_010120755.1_ASM1012075v1_genomic vanS-M VanM-type vancomycin resistance histidine kinase VanS ncbi db_v_1 NG_048450.1 abricate tool_v_1 100.0 NZ_CP039730.1 47306 48418 - 100.0 VANCOMYCIN