Mercurial > repos > iuc > hivclustering

comparison test-data/hivclustering-out1.json @ 0:ef842bb94d1f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
author iuc
date Thu, 14 Jun 2018 07:04:38 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:ef842bb94d1f
1 {
2 "Cluster sizes": [
3 4,
4 3
5 ],
6 "Degrees": {
7 "Distribution": [
8 2,
9 3,
10 2
11 ],
12 "Model": "Waring",
13 "fitted": [
14 0.5000721527871422,
15 0.24996196530120798,
16 0.12496295268484243
17 ],
18 "rho": 3287.8967604237114,
19 "rho CI": [
20 698.4419473417928,
21 10000.0
22 ]
23 },
24 "Directed Edges": {
25 "Count": 0,
26 "Reasons for unresolved directions": {
27 "Missing dates": 7
28 }
29 },
30 "Edges": [
31 {
32 "attributes": [
33 "BULK"
34 ],
35 "directed": false,
36 "length": 0.045156,
37 "removed": false,
38 "sequences": [
39 "B_FR_83_HXB2_ACC_K03455_5",
40 "B_US_83_RF_ACC_M17451"
41 ],
42 "source": 2,
43 "support": 0.0,
44 "target": 3
45 },
46 {
47 "attributes": [
48 "BULK"
49 ],
50 "directed": false,
51 "length": 0.0296218,
52 "removed": false,
53 "sequences": [
54 "B_FR_83_HXB2_ACC_K03455_5",
55 "B_US_86_JRFL_ACC_U63632"
56 ],
57 "source": 2,
58 "support": 0.0,
59 "target": 0
60 },
61 {
62 "attributes": [
63 "BULK"
64 ],
65 "directed": false,
66 "length": 0.0327566,
67 "removed": false,
68 "sequences": [
69 "B_FR_83_HXB2_ACC_K03455_5",
70 "B_US_90_WEAU160_ACC_U21135"
71 ],
72 "source": 2,
73 "support": 0.0,
74 "target": 1
75 },
76 {
77 "attributes": [
78 "BULK"
79 ],
80 "directed": false,
81 "length": 0.048328,
82 "removed": false,
83 "sequences": [
84 "B_US_83_RF_ACC_M17451",
85 "B_US_86_JRFL_ACC_U63632"
86 ],
87 "source": 3,
88 "support": 0.0,
89 "target": 0
90 },
91 {
92 "attributes": [
93 "BULK"
94 ],
95 "directed": false,
96 "length": 0.0408994,
97 "removed": false,
98 "sequences": [
99 "B_US_86_JRFL_ACC_U63632",
100 "B_US_90_WEAU160_ACC_U21135"
101 ],
102 "source": 0,
103 "support": 0.0,
104 "target": 1
105 },
106 {
107 "attributes": [
108 "BULK"
109 ],
110 "directed": false,
111 "length": 0.0287246,
112 "removed": false,
113 "sequences": [
114 "D_CD_83_ELI_ACC_K03454_7",
115 "D_CD_83_NDK_ACC_M27323"
116 ],
117 "source": 6,
118 "support": 0.0,
119 "target": 4
120 },
121 {
122 "attributes": [
123 "BULK"
124 ],
125 "directed": false,
126 "length": 0.0491974,
127 "removed": false,
128 "sequences": [
129 "D_CD_83_NDK_ACC_M27323",
130 "D_CD_84_84ZR085_ACC_U88822"
131 ],
132 "source": 4,
133 "support": 0.0,
134 "target": 5
135 }
136 ],
137 "HIV Stages": {
138 "Unknown": 7
139 },
140 "Multiple sequences": {
141 "Followup, days": null,
142 "Subjects with": 0
143 },
144 "Network Summary": {
145 "Clusters": 2,
146 "Edges": 7,
147 "Nodes": 7,
148 "Sequences used to make links": 7
149 },
150 "Nodes": [
151 {
152 "attributes": [],
153 "baseline": null,
154 "cluster": 1,
155 "edi": null,
156 "id": "B_FR_83_HXB2_ACC_K03455_5"
157 },
158 {
159 "attributes": [],
160 "baseline": null,
161 "cluster": 1,
162 "edi": null,
163 "id": "B_US_83_RF_ACC_M17451"
164 },
165 {
166 "attributes": [],
167 "baseline": null,
168 "cluster": 1,
169 "edi": null,
170 "id": "B_US_86_JRFL_ACC_U63632"
171 },
172 {
173 "attributes": [],
174 "baseline": null,
175 "cluster": 1,
176 "edi": null,
177 "id": "B_US_90_WEAU160_ACC_U21135"
178 },
179 {
180 "attributes": [],
181 "baseline": null,
182 "cluster": 2,
183 "edi": null,
184 "id": "D_CD_83_ELI_ACC_K03454_7"
185 },
186 {
187 "attributes": [],
188 "baseline": null,
189 "cluster": 2,
190 "edi": null,
191 "id": "D_CD_83_NDK_ACC_M27323"
192 },
193 {
194 "attributes": [],
195 "baseline": null,
196 "cluster": 2,
197 "edi": null,
198 "id": "D_CD_84_84ZR085_ACC_U88822"
199 }
200 ],
201 "Settings": {
202 "contaminants": null,
203 "edge-filtering": null,
204 "threshold": 0.8
205 }
206 }