Mercurial > repos > iuc > hivclustering
annotate test-data/hivclustering-out1.json @ 0:ef842bb94d1f draft
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
author | iuc |
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date | Thu, 14 Jun 2018 07:04:38 -0400 |
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rev | line source |
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0
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
1 { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
2 "Cluster sizes": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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3 4, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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4 3 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
5 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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6 "Degrees": { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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7 "Distribution": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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8 2, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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9 3, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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10 2 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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11 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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12 "Model": "Waring", |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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13 "fitted": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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14 0.5000721527871422, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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15 0.24996196530120798, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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16 0.12496295268484243 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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17 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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18 "rho": 3287.8967604237114, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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19 "rho CI": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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20 698.4419473417928, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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21 10000.0 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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22 ] |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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23 }, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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24 "Directed Edges": { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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25 "Count": 0, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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26 "Reasons for unresolved directions": { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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27 "Missing dates": 7 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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28 } |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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29 }, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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30 "Edges": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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31 { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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32 "attributes": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
33 "BULK" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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34 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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35 "directed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
36 "length": 0.045156, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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37 "removed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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38 "sequences": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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39 "B_FR_83_HXB2_ACC_K03455_5", |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
40 "B_US_83_RF_ACC_M17451" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
41 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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42 "source": 2, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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43 "support": 0.0, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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44 "target": 3 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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45 }, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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46 { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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47 "attributes": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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48 "BULK" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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49 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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50 "directed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
|
51 "length": 0.0296218, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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52 "removed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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53 "sequences": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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54 "B_FR_83_HXB2_ACC_K03455_5", |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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55 "B_US_86_JRFL_ACC_U63632" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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56 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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57 "source": 2, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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58 "support": 0.0, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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59 "target": 0 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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60 }, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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61 { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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62 "attributes": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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63 "BULK" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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changeset
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64 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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65 "directed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
changeset
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66 "length": 0.0327566, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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67 "removed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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68 "sequences": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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69 "B_FR_83_HXB2_ACC_K03455_5", |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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70 "B_US_90_WEAU160_ACC_U21135" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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71 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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72 "source": 2, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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73 "support": 0.0, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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74 "target": 1 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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75 }, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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76 { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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77 "attributes": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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78 "BULK" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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79 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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80 "directed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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81 "length": 0.048328, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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82 "removed": false, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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83 "sequences": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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84 "B_US_83_RF_ACC_M17451", |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
diff
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85 "B_US_86_JRFL_ACC_U63632" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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86 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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87 "source": 3, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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88 "support": 0.0, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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89 "target": 0 |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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90 }, |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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91 { |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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92 "attributes": [ |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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93 "BULK" |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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94 ], |
ef842bb94d1f
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
iuc
parents:
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95 "directed": false, |
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96 "length": 0.0408994, |
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97 "removed": false, |
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98 "sequences": [ |
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99 "B_US_86_JRFL_ACC_U63632", |
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100 "B_US_90_WEAU160_ACC_U21135" |
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101 ], |
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102 "source": 0, |
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103 "support": 0.0, |
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104 "target": 1 |
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105 }, |
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106 { |
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107 "attributes": [ |
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108 "BULK" |
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109 ], |
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110 "directed": false, |
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111 "length": 0.0287246, |
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112 "removed": false, |
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113 "sequences": [ |
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114 "D_CD_83_ELI_ACC_K03454_7", |
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115 "D_CD_83_NDK_ACC_M27323" |
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116 ], |
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117 "source": 6, |
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118 "support": 0.0, |
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119 "target": 4 |
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120 }, |
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121 { |
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122 "attributes": [ |
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123 "BULK" |
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124 ], |
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125 "directed": false, |
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126 "length": 0.0491974, |
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127 "removed": false, |
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128 "sequences": [ |
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129 "D_CD_83_NDK_ACC_M27323", |
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130 "D_CD_84_84ZR085_ACC_U88822" |
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131 ], |
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132 "source": 4, |
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133 "support": 0.0, |
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134 "target": 5 |
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135 } |
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136 ], |
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137 "HIV Stages": { |
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138 "Unknown": 7 |
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139 }, |
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140 "Multiple sequences": { |
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141 "Followup, days": null, |
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142 "Subjects with": 0 |
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143 }, |
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144 "Network Summary": { |
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145 "Clusters": 2, |
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146 "Edges": 7, |
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147 "Nodes": 7, |
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148 "Sequences used to make links": 7 |
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149 }, |
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150 "Nodes": [ |
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151 { |
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152 "attributes": [], |
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153 "baseline": null, |
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154 "cluster": 1, |
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155 "edi": null, |
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156 "id": "B_FR_83_HXB2_ACC_K03455_5" |
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157 }, |
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158 { |
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159 "attributes": [], |
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160 "baseline": null, |
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161 "cluster": 1, |
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162 "edi": null, |
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163 "id": "B_US_83_RF_ACC_M17451" |
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164 }, |
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165 { |
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166 "attributes": [], |
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167 "baseline": null, |
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168 "cluster": 1, |
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169 "edi": null, |
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170 "id": "B_US_86_JRFL_ACC_U63632" |
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171 }, |
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172 { |
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173 "attributes": [], |
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174 "baseline": null, |
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175 "cluster": 1, |
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176 "edi": null, |
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177 "id": "B_US_90_WEAU160_ACC_U21135" |
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178 }, |
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179 { |
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180 "attributes": [], |
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181 "baseline": null, |
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182 "cluster": 2, |
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183 "edi": null, |
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184 "id": "D_CD_83_ELI_ACC_K03454_7" |
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185 }, |
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186 { |
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187 "attributes": [], |
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188 "baseline": null, |
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189 "cluster": 2, |
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190 "edi": null, |
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191 "id": "D_CD_83_NDK_ACC_M27323" |
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192 }, |
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193 { |
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194 "attributes": [], |
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195 "baseline": null, |
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196 "cluster": 2, |
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197 "edi": null, |
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198 "id": "D_CD_84_84ZR085_ACC_U88822" |
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199 } |
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200 ], |
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201 "Settings": { |
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202 "contaminants": null, |
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203 "edge-filtering": null, |
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204 "threshold": 0.8 |
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205 } |
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206 } |