view test-data/MADE1.out.pfamtblout @ 2:54b6b4d0613a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 261c6a4ae771a24a27a23cd808a4ae6e5248939b
author iuc
date Thu, 01 Oct 2015 11:13:19 -0400
parents 62479bdcc059
children
line wrap: on
line source

# Sequence scores
# ---------------
#
# name                  bits   E-value   n   exp  bias    description
# ------------------- ------ --------- --- ----- -----    ---------------------
MADE1                   51.5   7.1e-18   5   9.6  28.5    MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon

# Domain scores
# -------------
#
#  name                 bits   E-value   hit  bias env-st env-en ali-st ali-en hmm-st hmm-en     description
# ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------      ---------------------
MADE1                   34.0     2e-12     4   0.7 302387 302466 302388 302466      2     80     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                   27.6     2e-10     3   0.7 174456 174577 174456 174514      1     44     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                    2.8     0.011     5   0.7 304021 304109 304060 304107     27     75     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                   -4.3         1     1   0.1  80030  80073  80044  80068     30     54     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                   -6.7         1     2   3.3 154011 154076 154012 154072     13     71     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#
# Program:         hmmscan
# Version:         3.1b1 (May 2013)
# Pipeline mode:   SEARCH
# Query file:      test-data/dna_target.fa
# Target file:     test-data/MADE1.hmm
# Option settings: hmmscan --tblout tblout --domtblout domtblout --pfamtblout pfamtblout test-data/MADE1.hmm test-data/dna_target.fa 
# Current dir:     /home/users/cpt/cpt/esr/Projects/galaxy/tools-iuc/tools/hmmer
# Date:            Tue Feb 10 14:40:35 2015
# [ok]