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comparison test-data/nhmmer.out.tblout @ 4:ca0b674e895b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:51:03 -0400
parents a9c62fc8187b
children b2453ee52845
comparison
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3:a9c62fc8187b 4:ca0b674e895b
1 # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target 1 # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target
2 # ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- 2 # ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
3 humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 1.2e-10 38.6 7.4 - 3 humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 8.7e-11 39.2 7.4 -
4 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 7.8e-08 29.6 8.3 - 4 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 6.4e-08 30.0 8.3 -
5 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 1.2e-07 28.9 6.0 - 5 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 9.3e-08 29.5 6.1 -
6 humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 7.2e-06 23.3 7.0 - 6 humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 6.3e-06 23.7 7.0 -
7 humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.3 7.0 - 7 humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.5 7.0 -
8 # 8 #
9 # Program: nhmmer 9 # Program: nhmmer
10 # Version: 3.1b2 (February 2015) 10 # Version: 3.2 (June 2018)
11 # Pipeline mode: SEARCH 11 # Pipeline mode: SEARCH
12 # Query file: /tmp/tmpnpsbd_6p/files/000/dataset_1.dat 12 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_36.dat
13 # Target file: /tmp/tmpnpsbd_6p/files/000/dataset_2.dat 13 # Target file: /tmp/tmpp4O0Ju/files/000/dataset_37.dat
14 # Option settings: nhmmer --tblout /tmp/tmpnpsbd_6p/files/000/dataset_4.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpnpsbd_6p/files/000/dataset_1.dat /tmp/tmpnpsbd_6p/files/000/dataset_2.dat 14 # Option settings: nhmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_39.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_36.dat /tmp/tmpp4O0Ju/files/000/dataset_37.dat
15 # Current dir: /tmp/tmpnpsbd_6p/job_working_directory/000/3/working 15 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/30/working
16 # Date: Fri Apr 6 16:39:46 2018 16 # Date: Fri Jun 8 12:18:56 2018
17 # [ok] 17 # [ok]