Mercurial > repos > iuc > hmmer_hmmbuild

diff hmmbuild.xml @ 5:750269125dc9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:38:16 -0400
parents 7ea31fc35394
children 6846f8789e33
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line diff
--- a/hmmbuild.xml	Mon Jun 11 15:52:17 2018 -0400
+++ b/hmmbuild.xml	Tue Jun 16 05:38:16 2020 -0400
@@ -54,13 +54,27 @@
     <test>
       <param name="msafile" value="globins4.sto"/>
       <expand macro="seed_test" />
-      <output name="hmmout" file="globins4.hmm" lines_diff="10"/>
+      <output name="hmmout" file="globins4.hmm" compare="sim_size">
+          <assert_contents>
+              <has_line_matching expression="HMMER3/f.*"/>
+              <has_line_matching expression="ALPH  amino"/>
+              <has_line_matching expression="NSEQ  4"/>
+              <has_line_matching expression="//"/>
+          </assert_contents>
+      </output>
     </test>
     <test>
       <param name="msafile" value="MADE1.sto"/>
       <param name="input_format_select" value="--dna"/>
       <expand macro="seed_test" />
-      <output name="hmmout" file="MADE1.hmm" lines_diff="14"/>
+      <output name="hmmout" file="MADE1.hmm" compare="sim_size">
+          <assert_contents>
+              <has_line_matching expression="HMMER3/f.*"/>
+              <has_line_matching expression="ALPH  DNA"/>
+              <has_line_matching expression="NSEQ  1997"/>
+              <has_line_matching expression="//"/>
+          </assert_contents>
+      </output>
     </test>
   </tests>
   <help><![CDATA[