Mercurial > repos > iuc > hmmer_hmmfetch

comparison test-data/uniprot_globins_match.out @ 7:a28fd001de59 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:14:16 +0000
parents fb459c8fb2ba
children
comparison
equal deleted inserted replaced
6:01c842e297f5 7:a28fd001de59
1 # hmmsearch :: search profile(s) against a sequence database 1 # hmmsearch :: search profile(s) against a sequence database
2 # HMMER 3.3 (Nov 2019); http://hmmer.org/ 2 # HMMER 3.3.2 (Nov 2020); http://hmmer.org/
3 # Copyright (C) 2019 Howard Hughes Medical Institute. 3 # Copyright (C) 2020 Howard Hughes Medical Institute.
4 # Freely distributed under the BSD open source license. 4 # Freely distributed under the BSD open source license.
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query HMM file: /tmp/tmpqydies2m/files/1/e/c/dataset_1eca2f81-02d4-4cd0-9081-3ea0f7eb36d7.dat 6 # query HMM file: /tmp/tmpzdnl83p_/files/f/6/6/dataset_f66fafa4-758d-4ace-89be-ff71fce4f56c.dat
7 # target sequence database: /tmp/tmpqydies2m/files/a/4/d/dataset_a4d3f992-2c56-4231-9590-fe0ab1f6413b.dat 7 # target sequence database: /tmp/tmpzdnl83p_/files/0/d/9/dataset_0d912a57-511c-4a51-a642-30fdf00f581c.dat
8 # max ASCII text line length: unlimited 8 # max ASCII text line length: unlimited
9 # Vit filter P threshold: <= 0.001 9 # Vit filter P threshold: <= 0.001
10 # Fwd filter P threshold: <= 1e-05 10 # Fwd filter P threshold: <= 1e-05
11 # random number seed set to: 4 11 # random number seed set to: 4
12 # number of worker threads: 1 12 # number of worker threads: 0
13 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 13 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
14 14
15 Query: dataset_a435d3bd-3e95-4c54-859f-736e9bc413b2 [M=149] 15 Query: dataset_a435d3bd-3e95-4c54-859f-736e9bc413b2 [M=149]
16 Scores for complete sequences (score includes all domains): 16 Scores for complete sequences (score includes all domains):
17 --- full sequence --- --- best 1 domain --- -#dom- 17 --- full sequence --- --- best 1 domain --- -#dom-
57 Passed Vit filter: 2 (1); expected 0.0 (0.001) 57 Passed Vit filter: 2 (1); expected 0.0 (0.001)
58 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) 58 Passed Fwd filter: 2 (1); expected 0.0 (1e-05)
59 Initial search space (Z): 2 [actual number of targets] 59 Initial search space (Z): 2 [actual number of targets]
60 Domain search space (domZ): 2 [number of targets reported over threshold] 60 Domain search space (domZ): 2 [number of targets reported over threshold]
61 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 61 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
62 # Mc/sec: 18.86 62 # Mc/sec: 34.40
63 // 63 //
64 [ok] 64 [ok]