Mercurial > repos > iuc > hmmer_hmmscan

view test-data/MADE1.out.tblout @ 0:216b19e6c317 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
author iuc
date Sat, 25 Jun 2016 15:06:16 -0400
parents
children 01219a31c48e
line wrap: on
line source

#                                                                         --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession   query name                    accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#-------------------  ----------          -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
MADE1                DF0000629.2 humanchr1/239220001-239550000 -            7.1e-18   51.5  28.5     2e-12   34.0   0.7   9.6   5   0   0   5   5   5   2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#
# Program:         hmmscan
# Version:         3.1b1 (May 2013)
# Pipeline mode:   SCAN
# Query file:      test-data/dna_target.fa
# Target file:     test-data/MADE1.hmm
# Option settings: hmmscan --tblout tblout --domtblout domtblout --pfamtblout pfamtblout test-data/MADE1.hmm test-data/dna_target.fa 
# Current dir:     /home/users/cpt/cpt/esr/Projects/galaxy/tools-iuc/tools/hmmer
# Date:            Tue Feb 10 14:40:35 2015
# [ok]