Mercurial > repos > iuc > hmmer_hmmsearch

comparison test-data/nhmmer.out.tblout @ 5:b774ae8e1609 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:27:07 -0400
parents 6867ed975e25
children d753d9169482
comparison
equal deleted inserted replaced
4:6867ed975e25 5:b774ae8e1609
1 # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target 1 # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target
2 # ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- 2 # ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
3 humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 8.7e-11 39.2 7.4 - 3 humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 4e-11 41.3 7.5 -
4 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 6.4e-08 30.0 8.3 - 4 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 1.9e-08 32.8 8.3 -
5 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 9.3e-08 29.5 6.1 - 5 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 78 302466 302389 302466 302387 330000 - 6.3e-08 31.0 6.7 -
6 humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 6.3e-06 23.7 7.0 - 6 humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 4.9e-06 25.0 7.0 -
7 humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.5 7.0 - 7 humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 71 304073 304103 304053 304109 330000 + 2.2 6.9 7.2 -
8 # 8 #
9 # Program: nhmmer 9 # Program: nhmmer
10 # Version: 3.2 (June 2018) 10 # Version: 3.3 (Nov 2019)
11 # Pipeline mode: SEARCH 11 # Pipeline mode: SEARCH
12 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_36.dat 12 # Query file: /tmp/tmpqydies2m/files/c/4/e/dataset_c4e67f40-cb86-438e-8bc0-6020ada9fc86.dat
13 # Target file: /tmp/tmpp4O0Ju/files/000/dataset_37.dat 13 # Target file: /tmp/tmpqydies2m/files/a/1/b/dataset_a1b4364c-0e9a-4709-b4ef-ab7e5661d9e9.dat
14 # Option settings: nhmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_39.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_36.dat /tmp/tmpp4O0Ju/files/000/dataset_37.dat 14 # Option settings: nhmmer --tblout /tmp/tmpqydies2m/files/b/d/d/dataset_bdd87d82-1ce1-4051-8d5f-f7251bf7fd18.dat --dfamtblout /tmp/tmpqydies2m/files/d/8/e/dataset_d8ee0d50-d171-4e8a-9c7d-1cbd4394296f.dat --aliscoresout /tmp/tmpqydies2m/files/5/1/3/dataset_5139892f-c507-40c4-b43d-f73023c634f4.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpqydies2m/files/c/4/e/dataset_c4e67f40-cb86-438e-8bc0-6020ada9fc86.dat /tmp/tmpqydies2m/files/a/1/b/dataset_a1b4364c-0e9a-4709-b4ef-ab7e5661d9e9.dat
15 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/30/working 15 # Current dir: /tmp/tmpqydies2m/job_working_directory/000/17/working
16 # Date: Fri Jun 8 12:18:56 2018 16 # Date: Thu May 14 18:54:51 2020
17 # [ok] 17 # [ok]